| ID | SAVERM_5628
| Type | CDS
|
| From | 6805871
| nt length | 756
|
| To | 6806626
| aa length | 251
|
| Gene | recO
| pI | 8.59
|
| Definition | putative DNA recombination and repair protein
| M.W (Da) | 27308
|
| Note | PF02565: Recombination protein O
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA recombination
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2510 putative DNA recombination and repair protein | 476 | 6.0e-174
|
| sgr | SGR_5014 putative DNA recombination and repair protein RecO | 456 | 1.0e-165
|
| sam | SAM23877_2560 DNA repair protein RecO | 472 | 3.0e-172
|
| scab | SCAB61921 putative DNA recombination and repair protein | 459 | 4.0e-167
|
| sace | SACE_1492 DNA repair protein RecO | 277 | 7.0e-95
|
| nfar | nfa14520 recO DNA repair protein | 243 | 1.2e-65
|
| mtub | gi|15609499 DNA repair protein RecO [Mycobacterium tuberculosis H37Rv] | 249 | 1.2e-67
|
| cglu | gi|19553482 COG1381:Recombinational DNA repair protein (RecF pathway) [Corynebacterium glutamicum] | 165 | 1.7e-42
|
| bsub | BG11189 recO, yqxN, yqfI; DNA repair and homologous recombination protein | 76 | 1.3e-15
|
| ecoli | gi|16130490 DNA repair protein RecO [Escherichia coli K12] | 48 | 3.2e-07
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RecO_C | 1 | Recombination protein O C terminal | 94-247 | 116.3 | 1e-33
|
| RecO_N | 1 | Recombination protein O N terminal | 4-88 | 100.8 | 2.8e-29
|
| RecO_N_2 | 1 | RecO N terminal | 11-70 | 36.6 | 2.6e-09
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1574 | Seems to have no N-terminal signal seq.
|