| ID | SAVERM_5660
| Type | CDS
|
| From | 6847420
| nt length | 351
|
| To | 6847070
| aa length | 116
|
| Gene | nirD
| pI | 5.67
|
| Definition | putative nitrite reductase (NAD(P)H) small subunit
| M.W (Da) | 12415
|
| Note | PF00355: Rieske [2Fe-2S] domain
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | specific pathways
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2488 putative nitrite reductase small subunit | 172 | 2.0e-57
|
| sgr | SGR_5052 putative nitrite reductase small subunit | 148 | 3.0e-48
|
| sam | SAM23877_2540 nitrite reductase, NAD(P)H-binding, small subunit | 184 | 8.0e-63
|
| scab | SCAB62281 putative nitrite reductase (NAD(P)H) small subunit | 191 | 3.0e-65
|
| sace | SACE_3803 nitrite reductase (NAD(P)H) small subunit | 90 | 1.0e-25
|
| nfar | nfa45600 nirD nitrite reductase (NAD(P)H) subunit | 102 | 8.4e-24
|
| mtub | gi|15607394 PROBABLE NITRITE REDUCTASE [NAD(P)H] SMALL SUBUNIT NIRD [Mycobacterium tuberculosis H37Rv] | 100 | 2.5e-23
|
| ecoli | gi|16131245 nitrite reductase small subunit [Escherichia coli K12] | 82 | 5.4e-18
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Rieske_2 | 1 | Rieske-like [2Fe-2S] domain | 20-115 | 108.5 | 1.3e-31
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_126392063.1 | nitrite reductase small subunit NirD [Streptomyces cyaneochr...
| 512 | 1.3e-65 |
| WP_189185220.1 | nitrite reductase small subunit NirD [Streptomyces albiflave...
| 512 | 1.5e-65 |
| WP_004001461.1 | nitrite reductase small subunit NirD [Streptomyces viridochr...
| 507 | 9.2e-65 |
| WP_138044538.1 | nitrite reductase small subunit NirD [Streptomyces montanus]...
| 506 | 9.8e-65 |
| WP_020136307.1 | nitrite reductase small subunit NirD [Streptomyces sp. 351MF...
| 506 | 1.3e-64 |
| WP_189861769.1 | nitrite reductase small subunit NirD [Streptomyces poonensis...
| 505 | 1.5e-64 |
| WP_119104036.1 | nitrite reductase small subunit NirD [Streptomyces sporangii...
| 504 | 2.2e-64 |
| WP_190188124.1 | nitrite reductase small subunit NirD [Streptomyces minutiscl...
| 504 | 2.4e-64 |
| WP_007381873.1 | MULTISPECIES: nitrite reductase small subunit NirD [Streptom...
| 504 | 2.7e-64 |
| WP_151481324.1 | nitrite reductase small subunit NirD [Streptomyces albicerus...
| 503 | 3.3e-64 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1417 | Seems to have no N-terminal signal seq.
|