| ID | SAVERM_5681
| Type | CDS
|
| From | 6873217
| nt length | 1734
|
| To | 6871484
| aa length | 577
|
| Gene |
| pI | 5.38
|
| Definition | putative ABC transporter ATP-binding protein
| M.W (Da) | 62577
|
| Note | PF00005: ABC transporter
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | transport / binding proteins & lipoproteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2463 putative ABC transporter | 1040 | 0.0e+00
|
| sgr | SGR_5069 putative ABC transporter ATPase and permease component | 1003 | 0.0e+00
|
| sam | SAM23877_2516 conserved membrane protein of unknown function | 1019 | 0.0e+00
|
| scab | SCAB62521 putative ABC transporter ATP-binding protein | 1043 | 0.0e+00
|
| nfar | nfa2630 ABC transporter | 677 | 0.0e+00
|
| mtub | gi|15608413 PROBABLE DRUGS-TRANSPORT TRANSMEMBRANE ATP-BINDING PROTEIN ABC TRANSPORTER [Mycobacterium tuberculosis H37Rv] | 587 | 5.4e-169
|
| cglu | gi|19552190 COG1132:ABC-type multidrug/protein/lipid transport system, ATPase component [Corynebacterium glutamicum] | 655 | 0.0e+00
|
| bsub | BG11849 yfiB; multidrug resistance protein | 377 | 7.4e-106
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ABC_membrane | 1 | ABC transporter transmembrane region | 19-288 | 151.7 | 2.9e-44
|
| ABC_tran | 1 | ABC transporter | 351-498 | 93.3 | 1.7e-26
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498455.1 | ABC transporter ATP-binding protein/permease [Streptomyces s...
| 2598 | 0.0e+00 |
|
| 2449 | 0.0e+00 |
| WP_138044583.1 | ABC transporter ATP-binding protein/permease [Streptomyces m...
| 2446 | 0.0e+00 |
| WP_119106796.1 | ABC transporter ATP-binding protein/permease [Streptomyces s...
| 2444 | 0.0e+00 |
| WP_134039856.1 | ABC transporter ATP-binding protein/permease [Streptomyces b...
| 2443 | 0.0e+00 |
| MPY51324.1 | ABC transporter ATP-binding protein [Streptomyces acidicola]
| 2443 | 0.0e+00 |
| WP_189185239.1 | ABC transporter ATP-binding protein/permease [Streptomyces a...
| 2442 | 0.0e+00 |
| WP_220140418.1 | ABC transporter ATP-binding protein/permease [Streptomyces s...
| 2440 | 0.0e+00 |
| WP_030933815.1 | ABC transporter ATP-binding protein/permease [Streptomyces s...
| 2439 | 0.0e+00 |
| WP_151468060.1 | ABC transporter ATP-binding protein/permease [Streptomyces t...
| 2438 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.5501 | Seems to have a cleavable N-term signal seq.
|