| ID | SAVERM_5877
| Type | CDS
|
| From | 7086857
| nt length | 1317
|
| To | 7088173
| aa length | 438
|
| Gene |
| pI | 7.17
|
| Definition | putative bifunctional protein (ribonuclease H/phosphoglycerate mutase)
| M.W (Da) | 45630
|
| Note | PF00300: Phosphoglycerate mutase family, PF00075: RNase H
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2299 putative bifunctional protein (ribonuclease H/phosphoglycerate mutase) | 603 | 0.0e+00
|
| sgr | SGR_5214 putative bifunctional protein (ribonuclease H/phosphoglycerate mutase) | 521 | 0.0e+00
|
| sam | SAM23877_2374 putative bifunctional protein (Ribonuclease H/phosphoglycerate mutase) | 601 | 0.0e+00
|
| scab | SCAB65661 putative bifunctional protein (ribonuclease H/phosphoglycerate mutase) | 572 | 0.0e+00
|
| sace | SACE_1584 putative bifunctional protein (ribonuclease H/phosphoglycerate mutase) | 283 | 5.0e-93
|
| nfar | nfa16400 phosphoglycerate mutase | 361 | 6.0e-101
|
| mtub | gi|15609365 hypothetical protein Rv2228c [Mycobacterium tuberculosis H37Rv] | 208 | 5.0e-55
|
| cglu | gi|19553436 COG0328:Ribonuclease HI [Corynebacterium glutamicum] | 304 | 6.1e-84
|
| bsub | BG11608 ypdQ; RNase HI homolog but no activity | 57 | 1.2e-09
|
| paer | PA1280 [gene=PA1280] [prot=hypothetical protein] [comment=PA1280] | 93 | 4.2e-20
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| His_Phos_1 | 1 | Histidine phosphatase superfamily (branch 1) | 237-433 | 191.1 | 1.5e-56
|
| RVT_3 | 1 | Reverse transcriptase-like | 9-131 | 74.9 | 4.2e-21
|
| RNase_H | 1 | RNase H | 7-132 | 37.4 | 2.5e-09
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189872230.1 | bifunctional RNase H/acid phosphatase [Streptomyces bluensis...
| 1312 | 1.3e-177 |
| WP_121887727.1 | bifunctional RNase H/acid phosphatase [Streptomyces shenzhen...
| 1304 | 2.1e-176 |
| NNN33164.1 | bifunctional RNase H/acid phosphatase [Streptomyces sp. S3(2020)]
| 1306 | 3.1e-176 |
| WP_206327480.1 | bifunctional RNase H/acid phosphatase [Streptomyces sp. S3(2...
| 1307 | 5.1e-176 |
| WP_200417124.1 | bifunctional RNase H/acid phosphatase [Streptomyces sp. Y2F8...
| 855 | 2.1e-108 |
| WP_215163513.1 | bifunctional RNase H/acid phosphatase [Streptomyces sp. ISL-...
| 837 | 6.1e-108 |
| WP_217212434.1 | bifunctional RNase H/acid phosphatase [Streptomyces sp. AC55...
| 855 | 1.4e-107 |
| WP_115508907.1 | bifunctional RNase H/acid phosphatase [Streptomyces sp. M7] ...
| 850 | 1.4e-107 |
| ELS52821.1 | putative bifunctional RNase H/acid phosphatase [Streptomyces viri...
| 832 | 2.6e-107 |
| WP_037889317.1 | bifunctional RNase H/acid phosphatase, partial [Streptomyces...
| 832 | 2.7e-107 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2291 | Seems to have no N-terminal signal seq.
|