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IDSAVERM_5903 TypeCDS
From7114112 nt length1035
To7113078 aa length344
Genesig48 pI8.28
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)36721
NotePF04542: Sigma-70 region 2 AseI frg.F
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO1276 RNA polymerase ECF sigma factor801.0e-18
samSAM23877_1357 putative RNA polymerase ECF sigma factor799.0e-19

*coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 224-8646.32.4e-12

Sigma70_r4_21Sigma-70, region 4123-16633.52.3e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_057613914.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 11061.2e-148
WP_062052434.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ca... 11061.3e-148
WP_097226104.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 10885.6e-146
WP_168490874.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 10885.7e-146
WP_189190603.1 sigma-70 family RNA polymerase sigma factor [Streptomyces al... 10871.5e-145
WP_095854987.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 10842.9e-145
WP_217565873.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 10833.7e-145
WP_067363212.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ol... 10773.2e-144
WP_143613188.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 10755.3e-144
WP_190168597.1 sigma-70 family RNA polymerase sigma factor [Streptomyces mi... 10756.8e-144

PSORT result

LocalizationCertaintyPSORT said
membrane0.2784 Seems to have no N-terminal signal seq.