| ID | SAVERM_6030
| Type | CDS
|
| From | 7261820
| nt length | 1128
|
| To | 7260693
| aa length | 375
|
| Gene | cobT1
| pI | 4.32
|
| Definition | putative nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
| M.W (Da) | 38742
|
| Note | cobalamin biosynthesis, PF02277: Phosphoribosyltransferase
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of coenzymes & prosthetic groups
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2175 putative nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase | 511 | 0.0e+00
|
| sgr | SGR_5335 putative nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase | 484 | 6.0e-173
|
| sam | SAM23877_2270 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 513 | 0.0e+00
|
| scab | SCAB67121 putative nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase | 530 | 0.0e+00
|
| sace | SACE_1650 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 297 | 3.0e-99
|
| nfar | nfa17000 cobT nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase | 322 | 2.6e-89
|
| mtub | gi|15609344 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [Mycobacterium tuberculosis H37Rv] | 290 | 8.3e-80
|
| cglu | gi|19553402 COG2038:NaMN:DMB phosphoribosyltransferase [Corynebacterium glutamicum] | 261 | 3.8e-71
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DBI_PRT | 1 | Phosphoribosyltransferase | 13-344 | 340.5 | 9.4e-102
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_164314437.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosylt...
| 992 | 2.2e-130 |
| WP_164427196.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosylt...
| 974 | 9.7e-128 |
| WP_200417018.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosylt...
| 969 | 3.0e-127 |
| WP_103843872.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosylt...
| 962 | 3.0e-126 |
| WP_055618623.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosylt...
| 963 | 3.3e-126 |
| WP_189321168.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosylt...
| 963 | 3.7e-126 |
| WP_033325463.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosylt...
| 963 | 4.3e-126 |
| WP_165262524.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosylt...
| 963 | 4.7e-126 |
| WP_189838313.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosylt...
| 962 | 5.2e-126 |
| WP_143631142.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosylt...
| 960 | 1.0e-125 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.2338 | Seems to have no N-terminal signal seq.
|