| ID | SAVERM_6049
| Type | CDS
|
| From | 7283247
| nt length | 399
|
| To | 7283645
| aa length | 132
|
| Gene |
| pI | 4.97
|
| Definition | putative integral membrane protein
| M.W (Da) | 14643
|
| Note |
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2154 putative integral membrane protein | 231 | 7.0e-81
|
| sgr | SGR_5354 putative integral membrane protein | 239 | 1.0e-83
|
| sam | SAM23877_2250 putative cytochrome c oxidase polypeptide 4 | 213 | 1.0e-73
|
| scab | SCAB67311 putative integral membrane protein | 251 | 1.0e-88
|
| sace | SACE_1679 integral membrane protein | 104 | 1.0e-30
|
| nfar | nfa17090 hypothetical protein | 97 | 3.6e-22
|
| mtub | gi|15609336 Possible conserved integral membrane protein [Mycobacterium tuberculosis H37Rv] | 104 | 2.3e-24
|
| cglu | gi|19553396 hypothetical protein, predicted by GeneMark hmm [Corynebacterium glutamicum] | 80 | 3.4e-17
|
| bsub | BG12893 yfiQ; similar to surface adhesion | 28 | 1.1e-01
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Cyt_c_ox_IV | 1 | Cytochrome c oxidase subunit IV | 1-129 | 181.3 | 7.7e-54
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_119102976.1 | MULTISPECIES: cytochrome c oxidase subunit 4 [Streptomyces] ...
| 657 | 3.4e-87 |
| NGO10511.1 | cytochrome c oxidase subunit 4 [Streptomyces scabichelini]
| 650 | 4.5e-86 |
|
| 647 | 1.4e-85 |
| WP_127828137.1 | cytochrome c oxidase subunit 4 [Streptomyces sp. San01] >gb
| 645 | 2.7e-85 |
| MPY61765.1 | cytochrome c oxidase subunit 4 [Streptomyces spongiae]
| 644 | 3.9e-85 |
| MPY54542.1 | cytochrome c oxidase subunit 4 [Streptomyces acidicola]
| 643 | 4.4e-85 |
| WP_134032387.1 | cytochrome c oxidase subunit 4 [Streptomyces bluensis] >dbj
| 642 | 6.7e-85 |
| WP_059133828.1 | MULTISPECIES: cytochrome c oxidase subunit 4 [unclassified S...
| 642 | 7.1e-85 |
| WP_067280299.1 | cytochrome c oxidase subunit 4 [Streptomyces jeddahensis] >g...
| 642 | 7.1e-85 |
| WP_045555372.1 | MULTISPECIES: cytochrome c oxidase subunit 4 [Streptomyces] ...
| 642 | 7.1e-85 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.2763 | Seems to have a cleavable N-term signal seq.
|