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IDSAVERM_6077 TypeCDS
From7314393 nt length621
To7313773 aa length206
Genesig49 pI9.62
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)22758
NotePF04545: Sigma-70, region 4 AseI frg.F
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
saceSACE_6402 RNA polymerase ECF-subfamily sigma factor1444.0e-44

*sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4134-18759.31.9e-16

Sigma70_r41Sigma-70, region 4140-18948.44.6e-13

Sigma70_r21Sigma-70 region 235-10246.91.6e-12

Sigma70_ECF1ECF sigma factor33-19129.07.9e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_126391569.1 RNA polymerase sigma factor [Streptomyces cyaneochromogenes]... 7383.7e-97
WP_189840271.1 RNA polymerase sigma factor [Streptomyces umbrinus] >dbj 7376.1e-97
WP_055612059.1 RNA polymerase sigma factor [Streptomyces phaeochromogenes] 7211.7e-94
WP_149822612.1 RNA polymerase sigma factor [Streptomyces tailanensis] 7176.6e-94
WP_145875292.1 RNA polymerase sigma factor [Streptomyces sp. BK340] >lcl 7169.1e-94
WP_062702842.1 sigma-70 family RNA polymerase sigma factor [Streptomyces re... 7141.6e-93
WP_004001891.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 7099.7e-93
WP_182311776.1 RNA polymerase sigma factor [Streptomyces sp. SCUT-3] >gb 6838.6e-89
WP_015661026.1 RNA polymerase sigma factor [Streptomyces davaonensis] >emb 6724.0e-87
WP_141571948.1 RNA polymerase sigma factor [Streptomyces ipomoeae] >lcl 6681.6e-86

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.3681 Seems to have no N-terminal signal seq.