| ID | SAVERM_6091
| Type | CDS
|
| From | 7328612
| nt length | 933
|
| To | 7327680
| aa length | 310
|
| Gene | nfo
| pI | 6.01
|
| Definition | putative endonuclease IV
| M.W (Da) | 32790
|
| Note | PF01261: Xylose isomerase-like TIM barrel
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2111 putative endonuclease | 541 | 0.0e+00
|
| sgr | SGR_5390 putative endonuclease | 505 | 0.0e+00
|
| sam | SAM23877_2205 putative endonuclease 4 | 547 | 0.0e+00
|
| scab | SCAB67701 putative endonuclease IV | 560 | 0.0e+00
|
| sace | SACE_7353 endonuclease IV | 110 | 2.0e-29
|
| nfar | nfa46690 endonuclease IV | 106 | 3.0e-24
|
| mtub | gi|15607810 endonuclease IV [Mycobacterium tuberculosis H37Rv] | 122 | 4.0e-29
|
| bsub | BG11665 yqfS; probable endonuclease IV [EC:3.1.21.2] | 120 | 7.8e-29
|
| ecoli | gi|16130097 endonuclease IV [Escherichia coli K12] | 144 | 5.7e-36
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| AP_endonuc_2 | 1 | Xylose isomerase-like TIM barrel | 46-267 | 97.6 | 6.2e-28
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1788 | Seems to have no N-terminal signal seq.
|