| ID | SAVERM_6098
| Type | CDS
|
| From | 7334766
| nt length | 366
|
| To | 7335131
| aa length | 121
|
| Gene |
| pI | 4.5
|
| Definition | putative transcriptional regulatory protein
| M.W (Da) | 13281
|
| Note |
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2105 putative transcriptional regulatory protein (fragment). | 223 | 1.0e-77
|
| sgr | SGR_5397 conserved hypothetical protein | 219 | 2.0e-76
|
| sam | SAM23877_2198 hypothetical protein | 221 | 5.0e-77
|
| scab | SCAB67771 putative transcriptional regulatory protein | 226 | 5.0e-79
|
| sace | SACE_1711 transcriptional regulatory protein | 124 | 8.0e-39
|
| nfar | nfa17340 hypothetical protein | 92 | 1.2e-20
|
| mtub | gi|15609312 conserved hypothetical regulatory protein [Mycobacterium tuberculosis H37Rv] | 80 | 2.3e-17
|
| cglu | gi|19553376 hypothetical protein, predicted by GeneMark hmm [Corynebacterium glutamicum] | 89 | 3.6e-20
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
no hits.
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498521.1 | Rv2175c family DNA-binding protein [Streptomyces sp. SID5469...
| 562 | 6.2e-73 |
| WP_015661049.1 | Rv2175c family DNA-binding protein [Streptomyces davaonensis...
| 558 | 1.8e-72 |
| WP_186284374.1 | helix-turn-helix domain-containing protein [Streptomyces lan...
| 553 | 1.4e-71 |
| WP_039932287.1 | MULTISPECIES: Rv2175c family DNA-binding protein [Streptomyc...
| 552 | 1.9e-71 |
| WP_020939506.1 | Rv2175c family DNA-binding protein [Streptomyces collinus] >...
| 551 | 2.3e-71 |
| WP_030848153.1 | MULTISPECIES: Rv2175c family DNA-binding protein [Streptomyc...
| 551 | 2.3e-71 |
| WP_073942871.1 | Rv2175c family DNA-binding protein [Streptomyces sp. TSRI010...
| 549 | 4.6e-71 |
| WP_046590895.1 | Rv2175c family DNA-binding protein [Streptomyces mangrovisol...
| 549 | 4.7e-71 |
| NUP15749.1 | helix-turn-helix domain-containing protein [Streptomyces sp.] >gb...
| 549 | 4.9e-71 |
| WP_033327430.1 | MULTISPECIES: Rv2175c family DNA-binding protein [Streptomyc...
| 549 | 5.2e-71 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1302 | Seems to have no N-terminal signal seq.
|