| ID | SAVERM_6126
| Type | CDS
|
| From | 7368009
| nt length | 720
|
| To | 7368728
| aa length | 239
|
| Gene |
| pI | 5.81
|
| Definition | hypothetical protein
| M.W (Da) | 25218
|
| Note | PF01168: Alanine racemase, N-terminal domain
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2080 hypothetical protein | 386 | 1.0e-138
|
| sgr | SGR_5425 conserved hypothetical protein | 372 | 5.0e-133
|
| sam | SAM23877_2171 hypothetical protein | 359 | 8.0e-128
|
| scab | SCAB68051 hypothetical protein | 402 | 9.0e-145
|
| sace | SACE_5833 pyridoxal-5'-phosphate dependent enzyme | 161 | 7.0e-50
|
| nfar | nfa17710 hypothetical protein | 177 | 9.5e-46
|
| mtub | gi|15609285 hypothetical protein Rv2148c [Mycobacterium tuberculosis H37Rv] | 156 | 1.3e-39
|
| cglu | gi|19553353 COG0325:Predicted enzyme with a TIM-barrel fold [Corynebacterium glutamicum] | 134 | 3.0e-33
|
| bsub | BG13374 ylmE; similar to hypothetical proteins | 103 | 9.1e-24
|
| ecoli | gi|16130852 putative enzyme with PLP-binding domain [Escherichia coli K12] | 136 | 1.4e-33
|
| paer | PA0394 [gene=PA0394] [prot=conserved hypothetical protein] [comment=PA0394] | 152 | 2.0e-38
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ala_racemase_N | 1 | Alanine racemase, N-terminal domain | 11-236 | 74.3 | 9.8e-21
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_188291681.1 | YggS family pyridoxal phosphate-dependent enzyme [Streptomyc...
| 994 | 4.1e-135 |
| WP_053847333.1 | YggS family pyridoxal phosphate-dependent enzyme [Streptomyc...
| 987 | 4.8e-134 |
| OPG03476.1 | YggS family pyridoxal phosphate enzyme [Streptomyces sp. GKU 895]
| 984 | 1.7e-133 |
| WP_103839874.1 | YggS family pyridoxal phosphate-dependent enzyme [Streptomyc...
| 981 | 4.8e-133 |
| NUR68112.1 | YggS family pyridoxal phosphate-dependent enzyme [Streptomyces sp...
| 980 | 5.7e-133 |
| WP_189938608.1 | YggS family pyridoxal phosphate-dependent enzyme [Streptomyc...
| 980 | 5.9e-133 |
| WP_109499351.1 | YggS family pyridoxal phosphate-dependent enzyme [Streptomyc...
| 979 | 8.3e-133 |
| WP_059197525.1 | YggS family pyridoxal phosphate-dependent enzyme [Streptomyc...
| 976 | 2.2e-132 |
| WP_062702960.1 | YggS family pyridoxal phosphate-dependent enzyme [Streptomyc...
| 976 | 2.4e-132 |
| WP_128429274.1 | YggS family pyridoxal phosphate-dependent enzyme [Streptomyc...
| 976 | 2.4e-132 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0977 | Seems to have no N-terminal signal seq.
|