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IDSAVERM_614 TypeCDS
From768552 nt length654
To767899 aa length217
Genesig5 pI5.79
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)23632
NotePF04542: Sigma-70 region 2 AseI frg.A
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
cglugi|19551505 COG1595:DNA-directed RNA polymerase specialized sigma subunits, sigma24 homologs [Corynebacterium glutamicum]1473.0e-37

*cglu, Corynebacterium glutamicum;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 251-11560.77.6e-17

Sigma70_r4_21Sigma-70, region 4148-19955.62.9e-15

Sigma70_r41Sigma-70, region 4152-19930.81.4e-07

Sigma70_ECF1ECF sigma factor36-19927.22.8e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_190174164.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 7231.6e-94
QIY93224.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. S1D... 7205.5e-94
WP_054228582.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7196.1e-94
WP_143612020.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 7196.4e-94
WP_067384872.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ol... 7161.9e-93
WP_143599761.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 7144.5e-93
WP_181647522.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7135.4e-93
WP_143606667.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 7119.5e-93
WP_078234912.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 7002.2e-91
WP_097227138.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6944.3e-90

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.3192 Seems to have no N-terminal signal seq.