| ID | SAVERM_6143
| Type | CDS
|
| From | 7388156
| nt length | 3540
|
| To | 7391695
| aa length | 1179
|
| Gene | dnaE1
| pI | 5.66
|
| Definition | putative DNA polymerase III alpha subunit
| M.W (Da) | 130781
|
| Note | PF07733: Bacterial DNA polymerase III alpha subunit
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA replication
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2064 putative DNA polymerase III alpha chain | 2308 | 0.0e+00
|
| sgr | SGR_5440 putative DNA polymerase III alpha subunit | 2218 | 0.0e+00
|
| sam | SAM23877_2151 DNA polymerase III subunit alpha | 2310 | 0.0e+00
|
| scab | SCAB68251 putative DNA polymerase III alpha subunit | 2295 | 0.0e+00
|
| sace | SACE_5815 DNA polymerase III alpha subunit | 1247 | 0.0e+00
|
| nfar | nfa18000 dnaE DNA polymerase III alpha subunit | 1441 | 0.0e+00
|
| mtub | gi|15608685 DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Rv] | 1370 | 0.0e+00
|
| cglu | gi|19553329 COG0587:DNA polymerase III alpha subunit [Corynebacterium glutamicum] | 1269 | 0.0e+00
|
| bsub | BG12583 dnaE; DNA polymerase III alpha subunit [EC:2.7.7.7] | 640 | 0.0e+00
|
| ecoli | gi|16128177 DNA polymerase III subunit alpha [Escherichia coli K12] | 709 | 0.0e+00
|
| paer | PA3640 [gene=dnaE] [prot=DNA polymerase III, alpha chain] [comment=PA3640] | 646 | 0.0e+00
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DNA_pol3_alpha | 1 | Bacterial DNA polymerase III alpha subunit | 316-756 | 542.6 | 5.1e-163
|
| PHP | 1 | PHP domain | 8-194 | 153.4 | 6.2e-45
|
| HHH_6 | 1 | Helix-hairpin-helix motif | 829-917 | 85.7 | 1.8e-24
|
| tRNA_anti-codon | 1 | OB-fold nucleic acid binding domain | 1020-1098 | 29.0 | 7.3e-07
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202497537.1 | DNA polymerase III subunit alpha [Streptomyces sp. SID5469]
| 6241 | 0.0e+00 |
| WP_054231583.1 | MULTISPECIES: DNA polymerase III subunit alpha [unclassified...
| 6126 | 0.0e+00 |
| WP_211178952.1 | DNA polymerase III subunit alpha [Streptomyces sp. RLA2-12]
| 6125 | 0.0e+00 |
| WP_143614578.1 | DNA polymerase III subunit alpha [Streptomyces sp. RLB3-6] >...
| 6121 | 0.0e+00 |
| WP_168490585.1 | MULTISPECIES: DNA polymerase III subunit alpha [Streptomyces...
| 6114 | 0.0e+00 |
| WP_217573077.1 | DNA polymerase III subunit alpha [Streptomyces sp. GbtcB7]
| 6113 | 0.0e+00 |
| WP_148013552.1 | DNA polymerase III subunit alpha [Streptomyces sp. me109] >l...
| 6110 | 0.0e+00 |
| QIY95322.1 | DNA polymerase III subunit alpha [Streptomyces sp. S1D4-11]
| 6109 | 0.0e+00 |
| WP_075026831.1 | DNA polymerase III subunit alpha [Streptomyces mirabilis] >e...
| 6108 | 0.0e+00 |
| WP_095858143.1 | MULTISPECIES: DNA polymerase III subunit alpha [unclassified...
| 6107 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1044 | Seems to have no N-terminal signal seq.
|