| ID | SAVERM_6177
| Type | CDS
|
| From | 7422537
| nt length | 1287
|
| To | 7423823
| aa length | 428
|
| Gene | trpB
| pI | 4.88
|
| Definition | putative tryptophan synthase beta subunit
| M.W (Da) | 45574
|
| Note | PF00291: Pyridoxal-phosphate dependent enzyme
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of amino acids & related molecules
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2037 tryptophan synthase beta subunit | 816 | 0.0e+00
|
| sgr | SGR_5471 putative tryptophan synthase beta subunit | 798 | 0.0e+00
|
| sam | SAM23877_2124 tryptophan synthase, beta subunit | 824 | 0.0e+00
|
| scab | SCAB68501 putative tryptophan synthase beta subunit | 813 | 0.0e+00
|
| sace | SACE_5749 tryptophan synthase beta chain | 631 | 0.0e+00
|
| nfar | nfa18610 trpB tryptophan synthase beta subunit | 586 | 1.1e-168
|
| mtub | gi|15608750 tryptophan synthase subunit beta [Mycobacterium tuberculosis H37Rv] | 575 | 2.0e-165
|
| cglu | gi|19554225 COG0133:Tryptophan synthase beta chain [Corynebacterium glutamicum] | 458 | 1.9e-130
|
| bsub | BG10290 trpB; tryptophan synthase beta chain [EC:4.2.1.20] | 459 | 1.1e-130
|
| ecoli | gi|16129222 tryptophan synthase subunit beta [Escherichia coli K12] | 439 | 1.3e-124
|
| paer | PA0036 [gene=trpB] [prot=tryptophan synthase beta chain] [comment=PA0036] | 494 | 6.0e-141
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| PALP | 1 | Pyridoxal-phosphate dependent enzyme | 65-390 | 171.3 | 2.8e-50
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189864492.1 | tryptophan synthase subunit beta [Streptomyces poonensis] >d...
| 2022 | 0.0e+00 |
| WP_046916382.1 | tryptophan synthase subunit beta [Streptomyces stelliscabiei...
| 2021 | 0.0e+00 |
| WP_086798178.1 | tryptophan synthase subunit beta [Streptomyces caniscabiei]
| 2019 | 0.0e+00 |
| WP_045555271.1 | MULTISPECIES: tryptophan synthase subunit beta [Streptomyces...
| 2016 | 0.0e+00 |
| WP_020115239.1 | MULTISPECIES: tryptophan synthase subunit beta [Streptomyces...
| 2016 | 0.0e+00 |
| WP_013004398.1 | MULTISPECIES: tryptophan synthase subunit beta [Streptomyces...
| 2016 | 0.0e+00 |
| EMF55377.1 | trpB protein [Streptomyces bottropensis ATCC 25435]
| 2014 | 0.0e+00 |
| WP_192362375.1 | tryptophan synthase subunit beta [Streptomyces caniscabiei] ...
| 2014 | 0.0e+00 |
| WP_055711374.1 | tryptophan synthase subunit beta [Streptomyces torulosus]
| 2013 | 0.0e+00 |
| WP_067363837.1 | tryptophan synthase subunit beta [Streptomyces olivochromoge...
| 2013 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2727 | Seems to have no N-terminal signal seq.
|