| ID | SAVERM_6223
| Type | CDS
|
| From | 7476571
| nt length | 933
|
| To | 7475639
| aa length | 310
|
| Gene | livH3
| pI | 8.85
|
| Definition | putative branched-chain amino acid ABC transporter permease protein
| M.W (Da) | 32772
|
| Note | PF02653: Branched-chain amino acid transport system / permease component
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | transport / binding proteins & lipoproteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2009 putative branched chain amino acid transport permease | 451 | 5.0e-162
|
| sgr | SGR_5522 putative branched chain amino acid ABC transporter permease protein | 412 | 1.0e-146
|
| sam | SAM23877_2093 leucine/isoleucine/valine transporter subunit, membrane component of ABC superfamily | 429 | 3.0e-153
|
| scab | SCAB68921 putative branched-chain amino acid ABC transporter permease protein | 434 | 4.0e-155
|
| sace | SACE_4883 ABC transporter permease protein | 107 | 6.0e-28
|
| nfar | nfa18720 branched-chain amino acid transporter permease protein | 215 | 3.5e-57
|
| ecoli | gi|16131329 high-affinity branched-chain amino acid transport protein (ABC superfamily, membrane) [Escherichia coli K12] | 226 | 1.5e-60
|
| paer | PA1073 [gene=braD] [prot=branched-chain amino acid transport protein BraD] [comment=PA1073] | 222 | 3.9e-59
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| BPD_transp_2 | 1 | Branched-chain amino acid transport system / permease component | 8-294 | 166.1 | 8.1e-49
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_127830505.1 | branched-chain amino acid ABC transporter permease [Streptom...
| 1381 | 0.0e+00 |
| WP_237529649.1 | branched-chain amino acid ABC transporter permease [Streptom...
| 1350 | 0.0e+00 |
| WP_189187654.1 | branched-chain amino acid ABC transporter permease [Streptom...
| 1280 | 2.5e-176 |
| WP_153291151.1 | branched-chain amino acid ABC transporter permease [Streptom...
| 1274 | 2.4e-175 |
| WP_168527626.1 | branched-chain amino acid ABC transporter permease [Streptom...
| 1271 | 6.6e-175 |
| WP_148013501.1 | branched-chain amino acid ABC transporter permease [Streptom...
| 1270 | 9.2e-175 |
| WP_081223853.1 | branched-chain amino acid ABC transporter permease [Streptom...
| 1257 | 7.5e-173 |
| WP_227294137.1 | branched-chain amino acid ABC transporter permease [Streptom...
| 1257 | 8.6e-173 |
| WP_099506582.1 | MULTISPECIES: branched-chain amino acid ABC transporter perm...
| 1254 | 2.4e-172 |
| WP_232648107.1 | branched-chain amino acid ABC transporter permease [Streptom...
| 1251 | 8.0e-172 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.5012 | Seems to have an uncleavable N-term signal seq
|