| ID | SAVERM_6233
| Type | CDS
|
| From | 7492899
| nt length | 1506
|
| To | 7494404
| aa length | 501
|
| Gene | rpsA
| pI | 4.27
|
| Definition | putative ribosomal protein S1
| M.W (Da) | 55061
|
| Note | PF00575: S1 RNA binding domain
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1998 30S ribosomal protein S1 | 907 | 0.0e+00
|
| sgr | SGR_5534 putative 30S ribosomal protein S1 | 894 | 0.0e+00
|
| sam | SAM23877_2081 30S ribosomal protein S1 | 907 | 0.0e+00
|
| scab | SCAB69061 putative ribosomal protein S1 | 906 | 0.0e+00
|
| sace | SACE_5431 30S ribosomal protein S1 | 775 | 0.0e+00
|
| nfar | nfa18970 rpsA ribosomal protein S1 | 766 | 0.0e+00
|
| mtub | gi|15608768 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Rv] | 749 | 0.0e+00
|
| cglu | gi|19552573 COG0539:Ribosomal protein S1 [Corynebacterium glutamicum] | 744 | 0.0e+00
|
| bsub | BG11005 ypfD, jofD; 30S ribosomal protein S1 | 293 | 1.2e-80
|
| ecoli | gi|16128878 30S ribosomal protein S1 [Escherichia coli K12] | 301 | 8.6e-83
|
| paer | PA3162 [gene=rpsA] [prot=30S ribosomal protein S1] [comment=PA3162] | 290 | 2.7e-79
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| S1 | 4 | S1 RNA binding domain | 36-108, 124-191, 209-280, 294-366 | 263.0 | 9e-80
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1128 | Seems to have no N-terminal signal seq.
|