| ID | SAVERM_6241
| Type | CDS
|
| From | 7500416
| nt length | 639
|
| To | 7499778
| aa length | 212
|
| Gene |
| pI | 10.34
|
| Definition | hypothetical protein
| M.W (Da) | 22493
|
| Note | PF01479: S4 domain
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1991 hypothetical protein | 221 | 8.0e-75
|
| sgr | SGR_3797 conserved hypothetical protein | 145 | 1.0e-45
|
| sam | SAM23877_2073 hypothetical protein | 207 | 9.0e-69
|
| scab | SCAB69141 hypothetical protein | 171 | 7.0e-55
|
| nfar | nfa55940 hypothetical protein | 164 | 4.1e-42
|
| cglu | gi|19553322 COG1188:Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Corynebacterium glutamicum] | 141 | 2.7e-35
|
| ecoli | gi|16131277 Hsp15; DNA/RNA binding heat shock protein [Escherichia coli K12] | 67 | 6.9e-13
|
| paer | PA5195 [gene=PA5195] [prot=probable heat shock protein] [comment=PA5195] | 80 | 1.4e-16
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| S4 | 1 | S4 domain | 45-91 | 49.1 | 3.1e-13
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_151478388.1 | RNA-binding S4 domain-containing protein [Streptomyces albic...
| 463 | 1.2e-55 |
| WP_189150201.1 | RNA-binding S4 domain-containing protein [Streptomyces lacri...
| 461 | 1.9e-55 |
| WP_190188478.1 | RNA-binding S4 domain-containing protein [Streptomyces minut...
| 459 | 6.3e-55 |
| WP_105973935.1 | RNA-binding S4 domain-containing protein [Streptomyces geran...
| 458 | 6.7e-55 |
|
| 457 | 6.8e-55 |
| WP_053741444.1 | RNA-binding S4 domain-containing protein [Streptomyces sp. N...
| 456 | 9.1e-55 |
| WP_193480631.1 | RNA-binding S4 domain-containing protein [Streptomyces janth...
| 456 | 1.2e-54 |
| GGQ67875.1 | hypothetical protein GCM10010145_42190 [Streptomyces ruber]
| 453 | 1.4e-54 |
| WP_055533917.1 | RNA-binding S4 domain-containing protein [Streptomyces grami...
| 455 | 2.0e-54 |
| WP_006383197.1 | MULTISPECIES: RNA-binding S4 domain-containing protein [Stre...
| 453 | 2.9e-54 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2339 | Seems to have no N-terminal signal seq.
|