| ID | SAVERM_6334
| Type | CDS
|
| From | 7601369
| nt length | 321
|
| To | 7601689
| aa length | 106
|
| Gene | emrE
| pI | 8.47
|
| Definition | putative SMR-type multi-drug efflux transporter
| M.W (Da) | 10633
|
| Note | PF00893: Small Multidrug Resistance protein
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | transport / binding proteins & lipoproteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1918 putative integral membrane protein | 157 | 3.0e-52
|
| sgr | SGR_5604 putative SMR-type multi-drug efflux transporter | 134 | 3.0e-43
|
| sam | SAM23877_1989 multidrug resistance protein | 162 | 4.0e-54
|
| scab | SCAB70111 putative SMR-type multi-drug efflux transporter | 152 | 3.0e-50
|
| sace | SACE_7214 small multidrug resistance protein, SMR family | 93 | 7.0e-27
|
| nfar | nfa19760 multi-drug efflux transporter | 102 | 3.6e-24
|
| mtub | gi|57117052 MULTIDRUGS-TRANSPORT INTEGRAL MEMBRANE PROTEIN MMR [Mycobacterium tuberculosis H37Rv] | 98 | 1.0e-22
|
| bsub | BG12586 ebrB; SMR-type multidrug efflux transporter | 80 | 1.0e-17
|
| ecoli | gi|16128526 DLP12 prophage; auxillary multidrug transport protein, methylviologen and ethidium resistance (SMR family) [Escherichia coli K12] | 97 | 1.7e-22
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Multi_Drug_Res | 1 | Small Multidrug Resistance protein | 1-93 | 98.1 | 3.2e-28
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_028803401.1 | multidrug efflux SMR transporter [Streptomyces sp. 142MFCol3...
| 351 | 2.2e-41 |
| WP_095933513.1 | multidrug efflux SMR transporter [Streptomyces sp. Tue6028] ...
| 347 | 1.1e-40 |
| WP_055515227.1 | multidrug efflux SMR transporter [Streptomyces aurantiacus]
| 347 | 1.1e-40 |
| WP_215211707.1 | MULTISPECIES: multidrug efflux SMR transporter [unclassified...
| 346 | 1.4e-40 |
| WP_150155991.1 | multidrug efflux SMR transporter [Streptomyces tendae] >gb
| 345 | 2.0e-40 |
| WP_053762343.1 | MULTISPECIES: multidrug efflux SMR transporter [Streptomyces...
| 345 | 2.0e-40 |
| WP_006382597.1 | MULTISPECIES: multidrug efflux SMR transporter [Streptomyces...
| 344 | 2.4e-40 |
| WP_145825149.1 | multidrug efflux SMR transporter [Streptomyces sp. T12] >lcl...
| 343 | 4.4e-40 |
| WP_229695429.1 | multidrug efflux SMR transporter [Streptomyces lacrimiflumin...
| 342 | 5.7e-40 |
| WP_062710291.1 | multidrug efflux SMR transporter [Streptomyces regalis] >gb
| 342 | 5.8e-40 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.3951 | Seems to have a cleavable N-term signal seq.
|