| ID | SAVERM_6336
| Type | CDS
|
| From | 7601712
| nt length | 537
|
| To | 7602248
| aa length | 178
|
| Gene |
| pI | 5.32
|
| Definition | putative TetR-family transcriptional regulator
| M.W (Da) | 19243
|
| Note | PF00440: Bacterial regulatory proteins, tetR family
| AseI frg. | F
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1917 hypothetical protein | 281 | 9.0e-99
|
| sgr | SGR_5605 putative TetR-family transcriptional regulator | 204 | 3.0e-68
|
| sam | SAM23877_1988 EbrA repressor | 251 | 4.0e-87
|
| scab | SCAB70121 putative TetR-family transcriptional regulator | 278 | 2.0e-97
|
| sace | SACE_5370 TetR-family transcriptional regulator | 96 | 2.0e-25
|
| nfar | nfa5580 hypothetical protein | 71 | 4.7e-14
|
| mtub | gi|15610203 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY DEOR-FAMILY) [Mycobacterium tuberculosis H37Rv] | 107 | 4.6e-25
|
| bsub | BG12647 pksA; transcriptional regulator of the polyketide synthase operon | 49 | 1.3e-07
|
| ecoli | gi|16128814 putative DEOR-type transcriptional regulator [Escherichia coli K12] | 80 | 4.6e-17
|
| paer | PA3699 [gene=PA3699] [prot=probable transcriptional regulator] [comment=PA3699] | 65 | 3.5e-12
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TetR_N | 1 | Bacterial regulatory proteins, tetR family | 13-58 | 30.4 | 2.3e-07
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_184596915.1 | TetR family transcriptional regulator [Streptomyces violarus...
| 593 | 6.7e-76 |
| WP_189731071.1 | TetR family transcriptional regulator [Streptomyces purpuras...
| 592 | 1.1e-75 |
| WP_131569134.1 | TetR family transcriptional regulator [Streptomyces sp. KM27...
| 588 | 2.9e-75 |
| WP_193480715.1 | TetR family transcriptional regulator [Streptomyces janthinu...
| 589 | 3.8e-75 |
| WP_152771500.1 | TetR family transcriptional regulator [Streptomyces spongiae...
| 581 | 4.5e-74 |
| WP_119106051.1 | TetR family transcriptional regulator [Streptomyces sporangi...
| 580 | 6.3e-74 |
| WP_086606120.1 | TetR family transcriptional regulator, partial [Streptomyces...
| 577 | 1.4e-73 |
| WP_030246875.1 | TetR family transcriptional regulator [Streptomyces sp. NRRL...
| 577 | 1.7e-73 |
| WP_193506450.1 | TetR family transcriptional regulator [Streptomyces bellus] ...
| 577 | 1.8e-73 |
| WP_168490441.1 | TetR family transcriptional regulator [Streptomyces sp. RLB1...
| 575 | 2.8e-73 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.2444 | Seems to have no N-terminal signal seq.
|