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IDSAVERM_6340 TypeCDS
From7607082 nt length621
To7607702 aa length206
Genesig51 pI8.48
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)22642
NotePF04545: Sigma-70, region 4 AseI frg.F
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
scabSCAB70161 putative RNA polymerase sigma factor3187.0e-113
saceSACE_7154 RNA polymerase ECF sigma factor1082.0e-30

*scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4126-17658.73.1e-16

Sigma70_r41Sigma-70, region 4129-17752.52.3e-14

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
GHH89174.1 hypothetical protein GCM10017771_38160 [Streptomyces capitiformi... 8572.9e-115
WP_033318117.1 SigE family RNA polymerase sigma factor [Streptomyces yereva... 8536.7e-115
WP_189324407.1 SigE family RNA polymerase sigma factor [Streptomyces flaveu... 8511.1e-114
WP_165339995.1 SigE family RNA polymerase sigma factor [Streptomyces ureily... 8492.5e-114
WP_217460358.1 SigE family RNA polymerase sigma factor [Streptomyces sp. BV... 8474.4e-114
WP_181659287.1 SigE family RNA polymerase sigma factor [Streptomyces himala... 8459.8e-114
WP_234850927.1 SigE family RNA polymerase sigma factor [Streptomyces indiae... 8441.2e-113
WP_152777226.1 SigE family RNA polymerase sigma factor [Streptomyces spongi... 8441.3e-113
WP_165255791.1 SigE family RNA polymerase sigma factor [Streptomyces scabic... 8431.6e-113
WP_190897848.1 SigE family RNA polymerase sigma factor [Streptomyces tuirus... 8422.6e-113

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.3728 Seems to have no N-terminal signal seq.