| ID | SAVERM_6404
| Type | CDS
|
| From | 7679774
| nt length | 981
|
| To | 7678794
| aa length | 326
|
| Gene | cobC
| pI | 7.28
|
| Definition | putative aminotransferase
| M.W (Da) | 34736
|
| Note | cobalamin biosynthesis, PF00155: Aminotransferase class I and II
| AseI frg. | S
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of amino acids & related molecules
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1859 putative aminotransferase | 442 | 9.0e-158
|
| sgr | SGR_5639 putative aminotransferase | 482 | 2.0e-170
|
| sam | SAM23877_1932 putative aminotransferase | 469 | 7.0e-168
|
| scab | SCAB70801 putative aminotransferase | 509 | 0.0e+00
|
| sace | SACE_1581 histidinol-phosphate aminotransferase | 294 | 4.0e-99
|
| nfar | nfa16320 aminotransferase | 294 | 6.2e-81
|
| mtub | gi|15609368 hypothetical protein Rv2231c [Mycobacterium tuberculosis H37Rv] | 256 | 1.5e-69
|
| paer | PA1276 [gene=cobC] [prot=cobalamin biosynthetic protein CobC] [comment=PA1276] | 92 | 6.4e-20
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Aminotran_1_2 | 1 | Aminotransferase class I and II | 7-317 | 111.3 | 5.1e-32
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_234381783.1 | Rv2231c family pyridoxal phosphate-dependent protein CobC [S...
| 1277 | 9.6e-175 |
|
| 1276 | 1.1e-174 |
| WP_030947980.1 | Rv2231c family pyridoxal phosphate-dependent protein CobC [S...
| 1275 | 1.3e-174 |
| WP_053191889.1 | Rv2231c family pyridoxal phosphate-dependent protein CobC [S...
| 1275 | 1.4e-174 |
| WP_142151125.1 | Rv2231c family pyridoxal phosphate-dependent protein CobC [S...
| 1276 | 1.7e-174 |
| KUO22554.1 | aminotransferase [Streptomyces dysideae]
| 1276 | 1.8e-174 |
| WP_123964303.1 | Rv2231c family pyridoxal phosphate-dependent protein CobC [S...
| 1272 | 3.8e-174 |
| WP_030040050.1 | Rv2231c family pyridoxal phosphate-dependent protein CobC [S...
| 1271 | 6.3e-174 |
| NUP36124.1 | threonine-phosphate decarboxylase [Streptomyces sp.]
| 1272 | 6.9e-174 |
| WP_232025335.1 | Rv2231c family pyridoxal phosphate-dependent protein CobC [S...
| 1271 | 9.2e-174 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1256 | Seems to have no N-terminal signal seq.
|