| ID | SAVERM_6416
| Type | CDS
|
| From | 7695934
| nt length | 1509
|
| To | 7694426
| aa length | 502
|
| Gene | cobQ1
| pI | 5.53
|
| Definition | putative cobyric acid synthase
| M.W (Da) | 53458
|
| Note | cobalamin biosynthesis, PF07685: CobB/CobQ-like glutamine amidotransferase domain
| AseI frg. | S
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of coenzymes & prosthetic groups
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1848 cobyric acid synthase | 878 | 0.0e+00
|
| sgr | SGR_5644 putative cobyric acid synthase | 849 | 0.0e+00
|
| sam | SAM23877_1920 Cobyric acid synthase | 907 | 0.0e+00
|
| scab | SCAB70871 putative cobyric acid synthase | 905 | 0.0e+00
|
| sace | SACE_5983 cobyric acid synthase | 550 | 0.0e+00
|
| nfar | nfa40880 cobyric acid synthase | 540 | 8.5e-155
|
| mtub | gi|57116707 cobyric acid synthase [Mycobacterium tuberculosis H37Rv] | 492 | 2.0e-140
|
| paer | PA1277 [gene=cobQ] [prot=cobyric acid synthase] [comment=PA1277] | 364 | 8.7e-102
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| GATase_3 | 1 | CobB/CobQ-like glutamine amidotransferase domain | 262-431 | 151.0 | 2.7e-44
|
| CbiA | 1 | CobQ/CobB/MinD/ParA nucleotide binding domain | 5-233 | 70.9 | 9.2e-20
|
| AAA_26 | 1 | AAA domain | 5-231 | 55.7 | 5.2e-15
|
| GATase | 1 | Glutamine amidotransferase class-I | 296-363 | 25.0 | 1.3e-05
|
| SNO | 1 | SNO glutamine amidotransferase family | 289-373 | 24.8 | 1.5e-05
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0762 | Seems to have no N-terminal signal seq.
|