| ID | SAVERM_6417
| Type | CDS
|
| From | 7696872
| nt length | 942
|
| To | 7695931
| aa length | 313
|
| Gene | cobD
| pI | 11.63
|
| Definition | putative cobalamin biosynthesis protein
| M.W (Da) | 32146
|
| Note | cobalamin biosynthesis, PF03186: CobD/Cbib protein
| AseI frg. | S
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of coenzymes & prosthetic groups
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1847 cobalamin biosynthesis protein | 432 | 4.0e-154
|
| sgr | SGR_5645 putative cobalamin biosynthesis protein | 430 | 6.0e-153
|
| sam | SAM23877_1919 Cobalamin biosynthesis protein CobD | 432 | 5.0e-154
|
| scab | SCAB70881 putative cobalamin biosynthesis protein | 464 | 7.0e-167
|
| sace | SACE_1574 cobalamin biosynthesis protein | 293 | 2.0e-99
|
| nfar | nfa16270 cobalamin biosynthesis protein | 306 | 1.2e-84
|
| mtub | gi|15609373 cobalamin biosynthesis protein [Mycobacterium tuberculosis H37Rv] | 298 | 4.1e-82
|
| paer | PA1275 [gene=cobD] [prot=cobalamin biosynthetic protein CobD] [comment=PA1275] | 204 | 8.5e-54
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| CobD_Cbib | 1 | CobD/Cbib protein | 12-289 | 291.8 | 4e-87
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189324495.1 | cobalamin biosynthesis protein [Streptomyces flaveus] >dbj
| 916 | 9.5e-121 |
| WP_033317802.1 | cobalamin biosynthesis protein [Streptomyces yerevanensis]
| 911 | 6.5e-120 |
| WP_165342890.1 | cobalamin biosynthesis protein [Streptomyces ureilyticus] >g...
| 905 | 4.8e-119 |
| WP_165269722.1 | cobalamin biosynthesis protein [Streptomyces scabichelini] >...
| 905 | 6.4e-119 |
| WP_031477286.1 | cobalamin biosynthesis protein [Streptomyces bicolor]
| 903 | 8.3e-119 |
| WP_055616205.1 | cobalamin biosynthesis protein [Streptomyces phaeochromogene...
| 903 | 1.1e-118 |
| WP_200399111.1 | cobalamin biosynthesis protein [Streptomyces sp. ZYC-3] >gb
| 902 | 1.1e-118 |
| WP_190230195.1 | cobalamin biosynthesis protein [Streptomyces umbrinus] >dbj
| 902 | 1.2e-118 |
| WP_155054897.1 | cobalamin biosynthesis protein [Streptomyces blattellae]
| 899 | 3.0e-118 |
| WP_189840579.1 | cobalamin biosynthesis protein [Streptomyces umbrinus] >dbj
| 898 | 5.8e-118 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.2062 | Seems to have no N-terminal signal seq.
|