| ID | SAVERM_6488
| Type | CDS
|
| From | 7772308
| nt length | 777
|
| To | 7773084
| aa length | 258
|
| Gene |
| pI | 4.01
|
| Definition | hypothetical protein
| M.W (Da) | 27630
|
| Note | PF07719: Tetratricopeptide repeat
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1790 hypothetical protein | 336 | 5.0e-119
|
| sgr | SGR_5707 conserved hypothetical protein | 328 | 1.0e-115
|
| scab | SCAB71631 hypothetical protein | 349 | 2.0e-123
|
| sace | SACE_5253 hypothetical protein | 195 | 6.0e-58
|
| nfar | nfa19930 hypothetical protein | 183 | 1.1e-47
|
| mtub | gi|15608829 hypothetical protein Rv1691 [Mycobacterium tuberculosis H37Rv] | 165 | 2.5e-42
|
| cglu | gi|19552625 COG0457:TPR-repeat-containing proteins [Corynebacterium glutamicum] | 169 | 9.3e-44
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TPR_19 | 1 | Tetratricopeptide repeat | 110-168 | 37.6 | 2.2e-09
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_237529698.1 | tetratricopeptide repeat protein [Streptomyces sp. SID5469]
| 826 | 2.4e-108 |
| SFF22626.1 | Tetratricopeptide repeat-containing protein [Streptomyces mirabi...
| 740 | 6.3e-96 |
| WP_079174014.1 | tetratricopeptide repeat protein [Streptomyces mirabilis]
| 740 | 2.6e-95 |
| KUM71099.1 | hypothetical protein AQI84_30195 [Streptomyces griseorubiginosus]
| 732 | 7.6e-95 |
| WP_194548878.1 | tetratricopeptide repeat protein [Streptomyces mirabilis]
| 737 | 8.2e-95 |
| AYC42335.1 | hypothetical protein DWG14_06630 [Streptomyces griseorubiginosus]
| 731 | 9.9e-95 |
| KYK12719.1 | hypothetical protein AUW26_03855 [Streptomyces sp. CC71]
| 731 | 1.2e-94 |
|
| 731 | 1.2e-94 |
| KUN63619.1 | hypothetical protein AQJ54_28120 [Streptomyces griseorubiginosus]
| 730 | 1.4e-94 |
| WP_212673440.1 | tetratricopeptide repeat protein [Streptomyces sp. A2-16]
| 733 | 1.4e-94 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2282 | Seems to have no N-terminal signal seq.
|