| ID | SAVERM_6499
| Type | CDS
|
| From | 7782993
| nt length | 1737
|
| To | 7784729
| aa length | 578
|
| Gene | recN
| pI | 4.49
|
| Definition | putative DNA recombination and repair protein
| M.W (Da) | 60137
|
| Note | PF02483: SMC family, C-terminal domain
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA recombination
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1780 putative DNA repair protein | 966 | 0.0e+00
|
| sgr | SGR_5715 putative recombination and DNA repair protein | 903 | 0.0e+00
|
| sam | SAM23877_1845 DNA repair protein RecN | 966 | 0.0e+00
|
| scab | SCAB71731 putative DNA recombination and repair protein | 934 | 0.0e+00
|
| sace | SACE_5248 recombination and DNA repair protein | 528 | 0.0e+00
|
| nfar | nfa19980 recN DNA repair protein | 511 | 5.0e-146
|
| mtub | gi|15608834 PROBABLE DNA REPAIR PROTEIN RECN (RECOMBINATION PROTEIN N) [Mycobacterium tuberculosis H37Rv] | 435 | 3.5e-123
|
| cglu | gi|19552630 COG0497:ATPases involved in DNA repair [Corynebacterium glutamicum] | 404 | 6.0e-114
|
| bsub | BG10310 recN; DNA repair and genetic recombination protein | 293 | 2.4e-80
|
| ecoli | gi|49176247 protein used in recombination and DNA repair [Escherichia coli K12] | 286 | 2.6e-78
|
| paer | PA4763 [gene=recN] [prot=DNA repair protein RecN] [comment=PA4763] | 293 | 3.8e-80
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SMC_N | 1 | RecF/RecN/SMC N terminal domain | 17-532 | 64.4 | 8.8e-18
|
| AAA_23 | 1 | AAA domain | 8-83 | 32.4 | 1.1e-07
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1816 | Seems to have no N-terminal signal seq.
|