| ID | SAVERM_6511
| Type | CDS
|
| From | 7800551
| nt length | 651
|
| To | 7801201
| aa length | 216
|
| Gene | scpB
| pI | 4.2
|
| Definition | putative chromosome segregation and condensation protein B
| M.W (Da) | 23731
|
| Note | PF04079: Putative transcriptional regulators (Ypuh-like)
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA packaging & segregation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1769 hypothetical protein | 333 | 2.0e-118
|
| sgr | SGR_5728 putative transcriptional regulator | 355 | 5.0e-127
|
| sam | SAM23877_1827 hypothetical protein | 357 | 1.0e-127
|
| scab | SCAB71871 putative chromosome segregation and condensation protein B | 366 | 2.0e-131
|
| sace | SACE_5238 putative segregation and condensation protein B | 188 | 9.0e-61
|
| nfar | nfa20100 hypothetical protein | 205 | 2.8e-54
|
| mtub | gi|15608848 hypothetical protein Rv1710 [Mycobacterium tuberculosis H37Rv] | 197 | 6.0e-52
|
| cglu | gi|19552641 COG1386:Predicted transcriptional regulator containing the HTH domain [Corynebacterium glutamicum] | 176 | 5.9e-46
|
| bsub | BG10525 ypuH; similar to unknown proteins | 103 | 7.9e-24
|
| paer | PA3197 [gene=PA3197] [prot=hypothetical protein] [comment=PA3197] | 92 | 2.8e-20
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SMC_ScpB | 1 | Segregation and condensation complex subunit ScpB | 23-180 | 195.5 | 4e-58
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_099502951.1 | MULTISPECIES: SMC-Scp complex subunit ScpB [Streptomyces] >g...
| 896 | 7.5e-121 |
| WP_095933336.1 | SMC-Scp complex subunit ScpB [Streptomyces sp. Tue6028] >gb
| 895 | 1.2e-120 |
| WP_028805234.1 | SMC-Scp complex subunit ScpB [Streptomyces sp. 142MFCol3.1]
| 890 | 5.4e-120 |
| WP_033324012.1 | MULTISPECIES: SMC-Scp complex subunit ScpB [Streptomyces] >d...
| 880 | 2.2e-118 |
| WP_055492609.1 | SMC-Scp complex subunit ScpB [Streptomyces sp. TP-A0356]
| 879 | 3.1e-118 |
| NGO43581.1 | SMC-Scp complex subunit ScpB [Streptomyces ureilyticus]
| 878 | 4.6e-118 |
| QIY95004.1 | SMC-Scp complex subunit ScpB [Streptomyces sp. S1D4-11]
| 877 | 5.8e-118 |
| WP_189191472.1 | SMC-Scp complex subunit ScpB [Streptomyces albiflavescens] >...
| 877 | 6.2e-118 |
| WP_067312952.1 | SMC-Scp complex subunit ScpB [Streptomyces griseochromogenes...
| 876 | 7.3e-118 |
| WP_095749471.1 | SMC-Scp complex subunit ScpB [Streptomyces sp. SA15] >gb
| 877 | 8.2e-118 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2872 | Seems to have no N-terminal signal seq.
|