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IDSAVERM_6582 TypeCDS
From7879724 nt length549
To7880272 aa length182
Genesig53 pI7.58
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)20551
Notesimilar to SCO1723, PF04542: Sigma-70 region 2 AseI frg.G2
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO1723 putative RNA polymerase sigma factor3031.0e-107
sgrSGR_5884 putative RNA polymerase ECF-subfamily sigma factor2214.0e-75
samSAM23877_1778 ECF RNA polymerase sigma factor SigK3325.0e-119
scabSCAB72451 putative RNA polymerase sigma factor3123.0e-111
nfarnfa8890 sigma factor1761.1e-45
mtubgi|15607586 RNA polymerase sigma-70 factor [Mycobacterium tuberculosis H37Rv]1721.6e-44

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 229-9062.71.9e-17

Sigma70_r4_21Sigma-70, region 4121-17454.18.2e-15

Sigma70_r41Sigma-70, region 4127-17652.03.4e-14

Sigma70_ECF1ECF sigma factor7-16727.22.8e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_202498616.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7682.0e-102
WP_168527356.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7342.2e-97
GGN90145.1 RNA polymerase sigma factor SigK [Streptomyces albiflavescens] 7325.9e-97
WP_189191544.1 sigma-70 family RNA polymerase sigma factor [Streptomyces al... 7317.4e-97
WP_189309829.1 sigma-70 family RNA polymerase sigma factor [Streptomyces br... 7301.2e-96
WP_099503046.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 7282.0e-96
WP_186283221.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7272.6e-96
WP_095933278.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7272.7e-96
WP_151474795.1 sigma-70 family RNA polymerase sigma factor [Streptomyces tr... 7273.4e-96
WP_150943914.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 7264.4e-96

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.0385 Seems to have no N-terminal signal seq.