| ID | SAVERM_6604
| Type | CDS
|
| From | 7901555
| nt length | 510
|
| To | 7902064
| aa length | 169
|
| Gene |
| pI | 8.39
|
| Definition | putative MerR-family transcriptional regulator
| M.W (Da) | 19014
|
| Note | PF00376: MerR family regulatory protein
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1697 putative soxR-like transcriptional regulator | 273 | 5.0e-96
|
| sgr | SGR_5803 putative SoxR-like transcriptional regulator | 265 | 3.0e-93
|
| sam | SAM23877_1757 MerR family transcriptional regulator | 277 | 2.0e-97
|
| scab | SCAB72741 putative MerR-family transcriptional regulator | 281 | 3.0e-99
|
| sace | SACE_5764 transcriptional regulator, MerR family | 167 | 2.0e-54
|
| nfar | nfa49080 transcriptional regulator | 190 | 4.9e-50
|
| ecoli | gi|16131889 redox-sensing activator of soxS [Escherichia coli K12] | 168 | 2.0e-43
|
| paer | PA2273 [gene=PA2273] [prot=probable transcriptional regulator] [comment=PA2273] | 164 | 5.1e-42
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| MerR-DNA-bind | 1 | MerR, DNA binding | 53-118 | 69.9 | 1.8e-19
|
| MerR_1 | 1 | MerR HTH family regulatory protein | 12-78 | 48.2 | 7.9e-13
|
| MerR | 1 | MerR family regulatory protein | 12-48 | 43.0 | 2.6e-11
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_151479532.1 | redox-sensitive transcriptional activator SoxR [Streptomyces...
| 705 | 2.5e-93 |
|
| 685 | 3.4e-90 |
| WP_200399267.1 | redox-sensitive transcriptional activator SoxR [Streptomyces...
| 684 | 6.2e-90 |
| WP_138047496.1 | redox-sensitive transcriptional activator SoxR [Streptomyces...
| 680 | 2.1e-89 |
| WP_186001116.1 | redox-sensitive transcriptional activator SoxR [Streptomyces...
| 680 | 2.4e-89 |
| WP_224734091.1 | redox-sensitive transcriptional activator SoxR [Streptomyces...
| 678 | 3.4e-89 |
| WP_189778492.1 | redox-sensitive transcriptional activator SoxR [Streptomyces...
| 679 | 3.4e-89 |
| WP_095855520.1 | MULTISPECIES: redox-sensitive transcriptional activator SoxR...
| 677 | 7.0e-89 |
| WP_206190728.1 | redox-sensitive transcriptional activator SoxR [Streptomyces...
| 676 | 9.4e-89 |
| GHB41815.1 | redox-sensitive transcriptional activator SoxR [Streptomyces umb...
| 675 | 1.1e-88 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1000 | Seems to have no N-terminal signal seq.
|