| ID | SAVERM_6613
| Type | CDS
|
| From | 7913414
| nt length | 603
|
| To | 7914016
| aa length | 200
|
| Gene |
| pI | 6.73
|
| Definition | putative TetR-family transcriptional regulator
| M.W (Da) | 22535
|
| Note | PF00440: Bacterial regulatory proteins, tetR family
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1691 putative tetR transcriptional regulator | 341 | 4.0e-121
|
| sgr | SGR_5808 putative TetR-family transcriptional regulator | 335 | 7.0e-120
|
| sam | SAM23877_1750 TetR transcriptional regulator | 341 | 6.0e-122
|
| scab | SCAB72821 putative TetR-family transcriptional regulator | 352 | 2.0e-126
|
| sace | SACE_5390 TetR-family transcriptional regulator | 230 | 3.0e-78
|
| mtub | gi|15607300 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) [Mycobacterium tuberculosis H37Rv] | 78 | 2.8e-16
|
| bsub | BG12170 ydgC; similar to hypothetical proteins | 56 | 7.6e-10
|
| paer | PA1315 [gene=PA1315] [prot=probable transcriptional regulator] [comment=PA1315] | 81 | 5.7e-17
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TetR_N | 1 | Bacterial regulatory proteins, tetR family | 19-65 | 81.0 | 3.7e-23
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| EGG45917.1 | TetR family transcriptional regulator [Streptomyces griseoauranti...
| 794 | 7.6e-106 |
|
| 790 | 4.8e-105 |
| GGJ02105.1 | hypothetical protein GCM10010121_010580 [Streptomyces brasiliens...
| 785 | 1.6e-104 |
| GGN69897.1 | TetR family transcriptional regulator [Streptomyces albiflavesce...
| 784 | 2.6e-104 |
| GGU94767.1 | hypothetical protein GCM10010260_32510 [Streptomyces filipinensi...
| 784 | 2.9e-104 |
|
| 783 | 6.1e-104 |
| GGS71728.1 | hypothetical protein GCM10010206_37620 [Streptomyces cinerochrom...
| 780 | 1.1e-103 |
| WP_234517536.1 | TetR/AcrR family transcriptional regulator [Streptomyces glo...
| 778 | 1.7e-103 |
| GGN18586.1 | hypothetical protein GCM10011578_047960 [Streptomyces fuscichrom...
| 778 | 2.1e-103 |
| GHB41744.1 | hypothetical protein GCM10010306_039190 [Streptomyces umbrinus]
| 778 | 2.3e-103 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1287 | Seems to have no N-terminal signal seq.
|