| ID | SAVERM_6627
| Type | CDS
|
| From | 7928559
| nt length | 759
|
| To | 7927801
| aa length | 252
|
| Gene | idnO
| pI | 5.36
|
| Definition | putative gluconate 5-dehydrogenase
| M.W (Da) | 26681
|
| Note | PF00106: short chain dehydrogenase
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | specific pathways
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1681 putative gluconate dehydrogenase | 462 | 3.0e-168
|
| sgr | SGR_1253 putative dehydrogenase | 148 | 1.0e-44
|
| scab | SCAB9571 putative L-idonate 5-dehydrogenase | 387 | 2.0e-138
|
| sace | SACE_0380 2-deoxy-D-gluconate 3-dehydrogenase | 179 | 1.0e-56
|
| nfar | nfa22670 short chain dehydrogenase | 154 | 5.5e-39
|
| mtub | gi|15609065 short chain dehydrogenase [Mycobacterium tuberculosis H37Rv] | 154 | 5.5e-39
|
| bsub | BG11400 kduD; 2-keto-3-deoxygluconate oxidoreductase [EC:1.1.1.125] | 178 | 3.1e-46
|
| ecoli | gi|16132088 gluconate 5-dehydrogenase [Escherichia coli K12] | 246 | 1.1e-66
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| adh_short_C2 | 1 | Enoyl-(Acyl carrier protein) reductase | 17-249 | 208.2 | 1.2e-61
|
| adh_short | 1 | short chain dehydrogenase | 12-201 | 188.0 | 1.1e-55
|
| KR | 1 | KR domain | 12-163 | 38.2 | 1.2e-09
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1128 | Seems to have no N-terminal signal seq.
|