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IDSAVERM_663 TypeCDS
From820435 nt length915
To821349 aa length304
Genesig6 pI6.31
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)32640
Notesimilar to SCO0414, PF04542: Sigma-70 region 2 AseI frg.A
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO0414 putative RNA polymerase sigma factor4557.0e-164
sgrSGR_765 putative RNA polymerase ECF-subfamily sigma factor4514.0e-162
samSAM23877_7152 putative sigma factor3478.0e-121
scabSCAB9641 putative RNA polymerase sigma factor4990.0e+00
nfarnfa27380 sigma factor3652.0e-102

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 214-7547.21.3e-12

Sigma70_r4_21Sigma-70, region 4124-17437.81e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_138046648.1 RNA polymerase sigma factor SigJ [Streptomyces montanus] >lc... 13370.0e+00
WP_097257867.1 RNA polymerase sigma factor SigJ [Streptomyces sp. Ag109_G2-... 13270.0e+00
WP_067299336.1 RNA polymerase sigma factor SigJ [Streptomyces griseochromog... 13250.0e+00
WP_225079892.1 RNA polymerase sigma factor SigJ [Streptomyces sp. CoT10] 13250.0e+00
WP_184734451.1 RNA polymerase sigma factor SigJ [Streptomyces netropsis] >l... 13230.0e+00
WP_033329338.1 RNA polymerase sigma factor SigJ [Streptomyces yerevanensis] 13200.0e+00
WP_189896485.1 RNA polymerase sigma factor SigJ [Streptomyces spiralis] >db... 13110.0e+00
WP_100593668.1 RNA polymerase sigma factor SigJ [Streptomyces sp. CB01635] ... 13100.0e+00
WP_030182988.1 RNA polymerase sigma factor SigJ [Streptomyces sp. NRRL S-81... 13053.0e-180
13028.7e-180

PSORT result

LocalizationCertaintyPSORT said
membrane0.1426 Seems to have no N-terminal signal seq.