| ID | SAVERM_6695
| Type | CDS
|
| From | 8005431
| nt length | 2814
|
| To | 8008244
| aa length | 937
|
| Gene | helY
| pI | 7.24
|
| Definition | putative ATP-dependent RNA helicase
| M.W (Da) | 104198
|
| Note | PF00270: DEAD/DEAH box helicase
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1631 putative helicase | 1768 | 0.0e+00
|
| sgr | SGR_5873 putative ATP-dependent RNA helicase | 1656 | 0.0e+00
|
| sam | SAM23877_1686 putative helicase HelY | 1742 | 0.0e+00
|
| scab | SCAB73621 putative ATP-dependent RNA helicase | 1715 | 0.0e+00
|
| sace | SACE_2265 putative ATP-dependent RNA helicase | 1064 | 0.0e+00
|
| nfar | nfa31620 ATP-dependent RNA helicase | 970 | 0.0e+00
|
| mtub | gi|15609229 PROBABLE ATP-DEPENDENT DNA HELICASE HELY [Mycobacterium tuberculosis H37Rv] | 884 | 0.0e+00
|
| cglu | gi|19552703 COG0513:Superfamily II DNA and RNA helicases [Corynebacterium glutamicum] | 763 | 0.0e+00
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DSHCT | 1 | DSHCT (NUC185) domain | 759-931 | 131.2 | 2.6e-38
|
| DEAD | 1 | DEAD/DEAH box helicase | 38-185 | 70.2 | 1.7e-19
|
| ResIII | 1 | Type III restriction enzyme, res subunit | 36-184 | 40.2 | 3.2e-10
|
| rRNA_proc-arch | 1 | rRNA-processing arch domain | 495-596 | 29.8 | 4.7e-07
|
| Helicase_C | 1 | Helicase conserved C-terminal domain | 358-439 | 23.5 | 5e-05
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2590 | Seems to have no N-terminal signal seq.
|