| ID | SAVERM_67
| Type | CDS
|
| From | 75600
| nt length | 1077
|
| To | 76676
| aa length | 358
|
| Gene |
| pI | 9.63
|
| Definition | putative AraC-family transcriptional regulator
| M.W (Da) | 38384
|
| Note | PF12833: Helix-turn-helix domain
| AseI frg. | A
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5017 putative regulatory protein | 182 | 5.0e-55
|
| sam | SAM23877_1312 putative transcriptional regulator | 111 | 2.0e-28
|
| nfar | nfa32450 transcriptional regulator | 166 | 2.2e-42
|
| mtub | gi|57116860 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] | 45 | 5.7e-06
|
| cglu | gi|19553665 COG2207:AraC-type DNA-binding domain-containing proteins [Corynebacterium glutamicum] | 83 | 1.7e-17
|
| ecoli | gi|16129345 regulatory protein for 2-phenylethylamine catabolism [Escherichia coli K12] | 84 | 8.4e-18
|
| paer | PA4094 [gene=PA4094] [prot=probable transcriptional regulator] [comment=PA4094] | 92 | 7.2e-20
|
*coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| AraC_binding_2 | 1 | AraC-binding-like domain | 46-222 | 78.8 | 3.5e-22
|
| HTH_18 | 1 | Helix-turn-helix domain | 263-343 | 75.6 | 2.6e-21
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189186812.1 | helix-turn-helix domain-containing protein [Streptomyces alb...
| 1453 | 0.0e+00 |
| WP_234516620.1 | helix-turn-helix domain-containing protein [Streptomyces glo...
| 1349 | 0.0e+00 |
| WP_190058485.1 | helix-turn-helix domain-containing protein [Streptomyces ech...
| 1270 | 1.5e-173 |
| QHA02439.1 | helix-turn-helix domain-containing protein [Streptomyces brousson...
| 1136 | 1.4e-152 |
| WP_158917435.1 | helix-turn-helix domain-containing protein [Streptomyces bro...
| 1084 | 9.3e-146 |
|
| 751 | 8.8e-95 |
| WP_067305862.1 | helix-turn-helix domain-containing protein [Streptomyces gri...
| 742 | 2.3e-93 |
| WP_173098310.1 | helix-turn-helix domain-containing protein [Actinomadura ver...
| 694 | 1.6e-86 |
| QKG24515.1 | AraC family transcriptional regulator [Actinomadura verrucosospor...
| 693 | 2.4e-86 |
| WP_208239589.1 | helix-turn-helix domain-containing protein [Actinomadura vio...
| 683 | 8.0e-85 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1044 | Seems to have no N-terminal signal seq.
|