| ID | SAVERM_6714
| Type | CDS
|
| From | 8030151
| nt length | 930
|
| To | 8029222
| aa length | 309
|
| Gene |
| pI | 4.49
|
| Definition | putative 5’-3’ exonuclease
| M.W (Da) | 33502
|
| Note | PF02739: 5'-3' exonuclease, N-terminal resolvase-like domain
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1622 putative 5'-3' exonuclease | 501 | 0.0e+00
|
| sgr | SGR_5889 putative 5^-3^ exonuclease | 495 | 2.0e-179
|
| sam | SAM23877_1677 5'-3' exonuclease | 529 | 0.0e+00
|
| scab | SCAB73781 putative 5'-3' exonuclease | 531 | 0.0e+00
|
| sace | SACE_2270 potential 5'-3' exonuclease | 273 | 6.0e-92
|
| nfar | nfa31600 5'-3' exonuclease | 244 | 9.1e-66
|
| mtub | gi|15609227 Probable 5'-3' exonuclease [Mycobacterium tuberculosis H37Rv] | 290 | 1.1e-79
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| 5_3_exonuc_N | 1 | 5'-3' exonuclease, N-terminal resolvase-like domain | 7-185 | 164.2 | 2.1e-48
|
| 5_3_exonuc | 1 | 5'-3' exonuclease, C-terminal SAM fold | 191-271 | 69.6 | 2.5e-19
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1156 | Seems to have no N-terminal signal seq.
|