| ID | SAVERM_6737
| Type | CDS
|
| From | 8054233
| nt length | 726
|
| To | 8054958
| aa length | 241
|
| Gene | infC
| pI | 6.54
|
| Definition | putative translation initiation factor IF-3
| M.W (Da) | 26779
|
| Note | PF00707: Translation initiation factor IF-3, C-terminal domain
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | initiation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1600 putative translation initiation factor IF-3 | 394 | 7.0e-142
|
| sgr | SGR_5905 putative translation initiation factor IF-3 | 368 | 2.0e-131
|
| sam | SAM23877_1656 Translation initiation factor IF-3 | 363 | 4.0e-130
|
| scab | SCAB73961 putative translation initiation factor IF-3 | 428 | 3.0e-155
|
| sace | SACE_5281 translation initiation factor IF3 protein | 261 | 2.0e-90
|
| nfar | nfa19140 infC translation initiation factor IF-3 | 229 | 1.6e-61
|
| mtub | gi|15608779 translation initiation factor IF-3 [Mycobacterium tuberculosis H37Rv] | 266 | 1.2e-72
|
| cglu | gi|19552595 COG0290:Translation initiation factor IF3 [Corynebacterium glutamicum] | 258 | 2.4e-70
|
| bsub | BG11944 infC; translation initiation factor IF-3 | 169 | 1.8e-43
|
| ecoli | gi|16129674 translation initiation factor IF-3 [Escherichia coli K12] | 169 | 1.2e-43
|
| paer | PA2743 [gene=infC] [prot=translation initiation factor IF-3] [comment=PA2743] | 170 | 9.5e-44
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| IF3_C | 1 | Translation initiation factor IF-3, C-terminal domain | 92-175 | 115.2 | 9e-34
|
| IF3_N | 1 | Translation initiation factor IF-3, N-terminal domain | 15-84 | 98.8 | 1.4e-28
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_190148730.1 | translation initiation factor IF-3 [Streptomyces humidus] >d...
| 1004 | 1.5e-136 |
| WP_078960287.1 | translation initiation factor IF-3 [Streptomyces sp. NRRL WC...
| 1000 | 7.5e-136 |
| KOV88006.1 | translation initiation factor IF-3 [Streptomyces sp. NRRL WC-3618...
| 999 | 1.7e-135 |
| WP_073499622.1 | translation initiation factor IF-3 [Streptomyces phaeoluteig...
| 997 | 1.8e-135 |
| WP_078935565.1 | translation initiation factor IF-3 [Streptomyces europaeisca...
| 996 | 2.9e-135 |
| WP_079087697.1 | translation initiation factor IF-3 [Streptomyces scabiei]
| 995 | 3.0e-135 |
| WP_218171477.1 | translation initiation factor IF-3 [Streptomyces mirabilis]
| 996 | 3.1e-135 |
| WP_013004920.1 | MULTISPECIES: translation initiation factor IF-3 [Streptomyc...
| 994 | 3.6e-135 |
| WP_150474411.1 | translation initiation factor IF-3 [Streptomyces galilaeus] ...
| 995 | 4.5e-135 |
| WP_189146303.1 | translation initiation factor IF-3 [Streptomyces lacrimiflum...
| 994 | 5.2e-135 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3668 | Seems to have no N-terminal signal seq.
|