| ID | SAVERM_6738
| Type | CDS
|
| From | 8055065
| nt length | 195
|
| To | 8055259
| aa length | 64
|
| Gene | rpmI
| pI | 12.23
|
| Definition | putative ribosomal protein L35
| M.W (Da) | 7079
|
| Note | PF01632: Ribosomal protein L35
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1599 50S ribosomal protein L35 | 122 | 2.0e-39
|
| sgr | SGR_5906 putative ribosomal protein L35 | 107 | 1.0e-33
|
| sam | SAM23877_1655 50S ribosomal subunit protein L35 | 122 | 2.0e-39
|
| scab | SCAB73971 putative ribosomal protein L35 | 119 | 1.0e-38
|
| sace | SACE_5280 50S ribosomal protein L35 | 88 | 5.0e-26
|
| nfar | nfa19150 rpmI ribosomal protein L35 | 89 | 3.7e-20
|
| mtub | gi|15608780 50S ribosomal protein L35 [Mycobacterium tuberculosis H37Rv] | 78 | 7.5e-17
|
| cglu | gi|19552596 COG0291:Ribosomal protein L35 [Corynebacterium glutamicum] | 78 | 3.4e-17
|
| bsub | BG11972 rpmI; 50S ribosomal protein L35 | 62 | 5.5e-12
|
| ecoli | gi|49176137 50S ribosomal protein L35 [Escherichia coli K12] | 45 | 9.2e-07
|
| paer | PA2742 [gene=rpmI] [prot=50S ribosomal protein L35] [comment=PA2742] | 42 | 7.0e-06
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L35p | 1 | Ribosomal protein L35 | 2-62 | 83.2 | 1.3e-23
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_003947156.1 | MULTISPECIES: 50S ribosomal protein L35 [Streptomyces] >gb
| 313 | 9.3e-37 |
| WP_190192663.1 | 50S ribosomal protein L35 [Streptomyces minutiscleroticus] >...
| 312 | 1.3e-36 |
| WP_015661694.1 | MULTISPECIES: 50S ribosomal protein L35 [Streptomyces] >gb
| 311 | 1.5e-36 |
| WP_004944288.1 | MULTISPECIES: 50S ribosomal protein L35 [Streptomyces] >gb
| 311 | 1.6e-36 |
| WP_019065473.1 | MULTISPECIES: 50S ribosomal protein L35 [Streptomyces] >gb
| 310 | 2.4e-36 |
| WP_030560333.1 | MULTISPECIES: 50S ribosomal protein L35 [Streptomyces] >gb
| 310 | 2.5e-36 |
| WP_103845027.1 | 50S ribosomal protein L35 [Streptomyces sp. Ru72] >gb
| 309 | 2.9e-36 |
| WP_055470308.1 | MULTISPECIES: 50S ribosomal protein L35 [Streptomyces] >lcl
| 309 | 3.2e-36 |
| WP_161700734.1 | MULTISPECIES: 50S ribosomal protein L35 [Streptomyces] >gb
| 309 | 3.4e-36 |
| WP_030754426.1 | MULTISPECIES: 50S ribosomal protein L35 [Streptomyces] >lcl
| 309 | 3.4e-36 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2463 | Seems to have no N-terminal signal seq.
|