| ID | SAVERM_6739
| Type | CDS
|
| From | 8055355
| nt length | 384
|
| To | 8055738
| aa length | 127
|
| Gene | rplT
| pI | 11.48
|
| Definition | putative ribosomal protein L20
| M.W (Da) | 14244
|
| Note | PF00453: Ribosomal protein L20
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1598 50S ribosomal protein L20 | 242 | 4.0e-85
|
| sgr | SGR_5907 putative ribosomal protein L20 | 248 | 2.0e-87
|
| sam | SAM23877_1654 50S ribosomal subunit protein L20 | 233 | 2.0e-81
|
| scab | SCAB73981 putative ribosomal protein L20 | 246 | 2.0e-86
|
| sace | SACE_5279 50S ribosomal subunit protein L20 | 190 | 1.0e-64
|
| nfar | nfa19160 rplT ribosomal protein L20 | 189 | 4.8e-50
|
| mtub | gi|15608781 50S ribosomal protein L20 [Mycobacterium tuberculosis H37Rv] | 186 | 3.2e-49
|
| cglu | gi|19552597 COG0292:Ribosomal protein L20 [Corynebacterium glutamicum] | 189 | 4.7e-50
|
| bsub | BG11971 rplT; 50S ribosomal protein L20 | 117 | 2.8e-28
|
| ecoli | gi|16129672 50S ribosomal protein L20 [Escherichia coli K12] | 127 | 1.8e-31
|
| paer | PA2741 [gene=rplT] [prot=50S ribosomal protein L20] [comment=PA2741] | 130 | 4.7e-32
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L20 | 1 | Ribosomal protein L20 | 3-109 | 147.7 | 1e-43
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_215098564.1 | 50S ribosomal protein L20 [Streptomyces sp. ISL-1] >lcl
| 641 | 8.7e-85 |
| WP_073758255.1 | MULTISPECIES: 50S ribosomal protein L20 [unclassified Strept...
| 639 | 1.4e-84 |
| WP_030114092.1 | MULTISPECIES: 50S ribosomal protein L20 [Streptomyces] >gb
| 639 | 1.6e-84 |
| WP_010045263.1 | MULTISPECIES: 50S ribosomal protein L20 [Streptomyces] >gb
| 635 | 5.5e-84 |
| WP_054236131.1 | MULTISPECIES: 50S ribosomal protein L20 [Streptomyces] >gb
| 635 | 5.7e-84 |
| WP_182315230.1 | 50S ribosomal protein L20 [Streptomyces sp. SCUT-3] >gb
| 634 | 7.4e-84 |
| WP_005319596.1 | MULTISPECIES: 50S ribosomal protein L20 [Streptomyces] >lcl
| 634 | 7.7e-84 |
| WP_007495403.1 | 50S ribosomal protein L20 [Streptomyces zinciresistens] >gb
| 634 | 8.6e-84 |
| WP_097215629.1 | MULTISPECIES: 50S ribosomal protein L20 [Streptomyces] >gb
| 634 | 8.6e-84 |
| WP_003989074.1 | MULTISPECIES: 50S ribosomal protein L20 [Streptomyces] >lcl
| 634 | 8.8e-84 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1022 | Seems to have no N-terminal signal seq.
|