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IDSAVERM_6785 TypeCDS
From8103254 nt length507
To8103760 aa length168
Genesig54 pI8.5
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)18325
Notesimilar to SCO1564, PF04542: Sigma-70 region 2 AseI frg.G2
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO1564 putative RNA polymerase sigma factor2004.0e-67
sgrSGR_5974 putative RNA polymerase ECF-subfamily sigma factor1452.0e-45
samSAM23877_1619 RNA polymerase sigma factor2053.0e-69
scabSCAB74361 putative RNA polymerase sigma factor2156.0e-73
saceSACE_6998 RNA polymerase sigma factor697.0e-16

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result

no hits.

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_046702668.1 sigma-70 family RNA polymerase sigma factor [Streptomyces eu... 4189.8e-50
WP_099500178.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 4152.8e-49
WP_046919557.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 4129.4e-49
WP_005485356.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 4083.7e-48
WP_189187953.1 sigma-70 family RNA polymerase sigma factor [Streptomyces al... 4074.3e-48
WP_149827216.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ta... 4067.4e-48
WP_151476785.1 sigma-70 family RNA polymerase sigma factor [Streptomyces al... 4069.0e-48
WP_152173735.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ph... 4041.5e-47
WP_099923734.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 4032.3e-47
WP_095855736.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 3998.5e-47

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.0389 Seems to have no N-terminal signal seq.