| ID | SAVERM_6831
| Type | CDS
|
| From | 8155015
| nt length | 606
|
| To | 8155620
| aa length | 201
|
| Gene | pdxT
| pI | 5.3
|
| Definition | putative pyridoxine biosynthesis protein (glutamine amidotransferase)
| M.W (Da) | 21434
|
| Note | PF01174: SNO glutamine amidotransferase family
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of coenzymes & prosthetic groups
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1522 hypothetical protein | 338 | 7.0e-121
|
| sgr | SGR_6013 putative glutamine amidotransferase | 342 | 2.0e-122
|
| sam | SAM23877_1573 Glutamine amidotransferase subunit PdxT | 335 | 2.0e-119
|
| scab | SCAB74851 putative pyridoxine biosynthesis protein (glutamine amidotransferase) | 337 | 3.0e-120
|
| sace | SACE_2017 SNO glutamine amidotransferase | 216 | 2.0e-72
|
| nfar | nfa37030 amidotransferase | 231 | 2.5e-62
|
| mtub | gi|15609741 hypothetical protein Rv2604c [Mycobacterium tuberculosis H37Rv] | 208 | 2.3e-55
|
| cglu | gi|19552015 COG0311:Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Corynebacterium glutamicum] | 195 | 1.1e-51
|
| bsub | BG10076 yaaE; vitamin B6 biosynthesis | 190 | 5.8e-50
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SNO | 1 | SNO glutamine amidotransferase family | 8-192 | 203.1 | 3.2e-60
|
| GATase_3 | 1 | CobB/CobQ-like glutamine amidotransferase domain | 24-115 | 46.2 | 3.7e-12
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_067312488.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 837 | 2.0e-112 |
| WP_095933057.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 833 | 8.3e-112 |
| WP_031486803.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 830 | 3.0e-111 |
| WP_028801489.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 829 | 3.4e-111 |
| WP_161064883.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 828 | 4.8e-111 |
| WP_097255746.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 828 | 5.8e-111 |
| WP_189187997.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 827 | 8.4e-111 |
| WP_094220707.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 826 | 1.1e-110 |
| WP_103547816.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 825 | 1.6e-110 |
| WP_150943656.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [St...
| 825 | 1.6e-110 |
PSORT result
| Localization | Certainty | PSORT said
|
| outside | 0.3000 | Seems to have a cleavable N-term signal seq.
|