| ID | SAVERM_6832
| Type | CDS
|
| From | 8155698
| nt length | 753
|
| To | 8156450
| aa length | 250
|
| Gene |
| pI | 4.36
|
| Definition | hypothetical protein
| M.W (Da) | 26632
|
| Note | PF01709: Domain of unknown function DUF28
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1521 hypothetical protein | 479 | 4.0e-175
|
| sgr | SGR_6014 conserved hypothetical protein | 480 | 2.0e-175
|
| sam | SAM23877_1572 hypothetical protein | 478 | 2.0e-174
|
| scab | SCAB74861 hypothetical protein | 470 | 2.0e-171
|
| sace | SACE_2018 protein of unknown function DUF28 | 402 | 1.0e-144
|
| nfar | nfa37020 hypothetical protein | 405 | 2.3e-114
|
| mtub | gi|15609740 hypothetical protein Rv2603c [Mycobacterium tuberculosis H37Rv] | 398 | 2.2e-112
|
| cglu | gi|19552873 COG0217:Uncharacterized ACR [Corynebacterium glutamicum] | 352 | 9.6e-99
|
| bsub | BG13783 yrbC; similar to spore coat protein | 216 | 7.9e-58
|
| ecoli | gi|16129817 hypothetical protein b1864 [Escherichia coli K12] | 227 | 6.6e-61
|
| paer | PA0964 [gene=PA0964] [prot=conserved hypothetical protein] [comment=PA0964] | 214 | 7.9e-57
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Transcrip_reg | 1 | Transcriptional regulator | 5-238 | 300.4 | 7.6e-90
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_055614442.1 | MULTISPECIES: YebC/PmpR family DNA-binding transcriptional r...
| 1290 | 9.6e-180 |
| WP_143635426.1 | YebC/PmpR family DNA-binding transcriptional regulator [Stre...
| 1286 | 3.1e-179 |
| WP_190229293.1 | YebC/PmpR family DNA-binding transcriptional regulator [Stre...
| 1286 | 4.0e-179 |
| WP_190034505.1 | YebC/PmpR family DNA-binding transcriptional regulator [Stre...
| 1285 | 4.5e-179 |
| WP_189839896.1 | YebC/PmpR family DNA-binding transcriptional regulator [Stre...
| 1282 | 1.3e-178 |
| WP_019066362.1 | MULTISPECIES: YebC/PmpR family DNA-binding transcriptional r...
| 1280 | 3.4e-178 |
| WP_135333390.1 | YebC/PmpR family DNA-binding transcriptional regulator [Stre...
| 1279 | 4.6e-178 |
| WP_116503363.1 | MULTISPECIES: YebC/PmpR family DNA-binding transcriptional r...
| 1278 | 5.0e-178 |
| WP_168527194.1 | YebC/PmpR family DNA-binding transcriptional regulator [Stre...
| 1278 | 6.1e-178 |
| WP_127828506.1 | YebC/PmpR family DNA-binding transcriptional regulator [Stre...
| 1277 | 6.9e-178 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2362 | Seems to have no N-terminal signal seq.
|