| ID | SAVERM_6833
| Type | CDS
|
| From | 8156649
| nt length | 531
|
| To | 8157179
| aa length | 176
|
| Gene | ruvC
| pI | 10.05
|
| Definition | putative Holliday junction nuclease
| M.W (Da) | 18496
|
| Note | PF02075: Crossover junction endodeoxyribonuclease RuvC
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA recombination
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1520 ruvC crossover junction endodeoxyribonuclease | 281 | 1.0e-98
|
| sgr | SGR_6015 putative Holliday junction nuclease | 269 | 8.0e-94
|
| sam | SAM23877_1571 component of RuvABC resolvasome, endonuclease (modular protein) | 259 | 1.0e-89
|
| scab | SCAB74871 putative Holliday junction nuclease | 295 | 1.0e-104
|
| sace | SACE_2021 crossover junction endodeoxyribonuclease RuvC | 202 | 9.0e-68
|
| nfar | nfa36970 ruvC Holliday junction nuclease | 218 | 1.8e-58
|
| mtub | gi|15609731 Holliday junction resolvase [Mycobacterium tuberculosis H37Rv] | 214 | 2.0e-57
|
| cglu | gi|19552872 COG0817:Holliday junction resolvasome endonuclease subunit [Corynebacterium glutamicum] | 194 | 2.6e-51
|
| ecoli | gi|16129816 Holliday junction resolvase [Escherichia coli K12] | 106 | 7.7e-25
|
| paer | PA0965 [gene=ruvC] [prot=Holliday junction resolvase RuvC] [comment=PA0965] | 93 | 1.2e-20
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RuvC | 1 | Crossover junction endodeoxyribonuclease RuvC | 3-152 | 176.5 | 2.7e-52
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_215095617.1 | crossover junction endodeoxyribonuclease RuvC [Streptomyces ...
| 746 | 2.6e-99 |
| NEB78596.1 | crossover junction endodeoxyribonuclease RuvC [Streptomyces sp. S...
| 726 | 3.2e-96 |
|
| 721 | 2.1e-95 |
| WP_030681064.1 | crossover junction endodeoxyribonuclease RuvC [Streptomyces ...
| 719 | 3.1e-95 |
| WP_150510014.1 | crossover junction endodeoxyribonuclease RuvC [Streptomyces ...
| 718 | 5.1e-95 |
| WP_214944361.1 | MULTISPECIES: crossover junction endodeoxyribonuclease RuvC ...
| 716 | 1.1e-94 |
| WP_190148812.1 | crossover junction endodeoxyribonuclease RuvC [Streptomyces ...
| 714 | 2.7e-94 |
| WP_210977985.1 | crossover junction endodeoxyribonuclease RuvC, partial [Stre...
| 713 | 3.0e-94 |
| WP_128378379.1 | crossover junction endodeoxyribonuclease RuvC [Streptomyces ...
| 712 | 3.6e-94 |
| WP_059299548.1 | crossover junction endodeoxyribonuclease RuvC [Streptomyces ...
| 713 | 3.9e-94 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0874 | Seems to have no N-terminal signal seq.
|