| ID | SAVERM_6834
| Type | CDS
|
| From | 8157176
| nt length | 612
|
| To | 8157787
| aa length | 203
|
| Gene | ruvA
| pI | 6.54
|
| Definition | putative Holliday junction DNA helicase subunit B
| M.W (Da) | 20910
|
| Note | PF01330: RuvA N terminal domain
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA recombination
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1519 ruvA holliday junction DNA helicase | 350 | 1.0e-125
|
| sgr | SGR_6016 putative Holliday junction DNA helicase subunit B | 320 | 2.0e-113
|
| sam | SAM23877_1570 Holliday junction ATP-dependent DNA helicase RuvA | 330 | 9.0e-118
|
| scab | SCAB74881 putative Holliday junction DNA helicase subunit B | 329 | 3.0e-117
|
| sace | SACE_2022 Holliday junction DNA helicase | 157 | 1.0e-49
|
| nfar | nfa36960 ruvA Holliday junction DNA helicase B subunit | 166 | 1.3e-42
|
| mtub | gi|15609730 Holliday junction DNA helicase motor protein [Mycobacterium tuberculosis H37Rv] | 159 | 1.6e-40
|
| cglu | gi|19552871 COG0632:Holliday junction resolvasome DNA-binding subunit [Corynebacterium glutamicum] | 140 | 4.3e-35
|
| bsub | BG11973 ruvA; Holliday junction DNA helicase | 90 | 4.8e-20
|
| ecoli | gi|16129814 Holliday junction DNA helicase motor protein [Escherichia coli K12] | 98 | 3.4e-22
|
| paer | PA0966 [gene=ruvA] [prot=Holliday junction DNA helicase RuvA] [comment=PA0966] | 108 | 2.6e-25
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RuvA_N | 1 | RuvA N terminal domain | 1-61 | 67.9 | 5.6e-19
|
| HHH_5 | 1 | Helix-hairpin-helix domain | 71-129 | 57.9 | 1.1e-15
|
| RuvA_C | 1 | RuvA, C-terminal domain | 150-199 | 46.0 | 5e-12
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_081223369.1 | Holliday junction branch migration protein RuvA [Streptomyce...
| 799 | 1.5e-106 |
| WP_164369958.1 | Holliday junction branch migration protein RuvA [Streptomyce...
| 794 | 1.0e-105 |
| WP_138047810.1 | Holliday junction branch migration protein RuvA [Streptomyce...
| 793 | 1.3e-105 |
| WP_150165647.1 | MULTISPECIES: Holliday junction branch migration protein Ruv...
| 792 | 1.9e-105 |
| WP_125511583.1 | Holliday junction branch migration protein RuvA [Streptomyce...
| 792 | 2.1e-105 |
| WP_028801486.1 | Holliday junction branch migration protein RuvA [Streptomyce...
| 789 | 4.8e-105 |
| WP_151468452.1 | Holliday junction branch migration protein RuvA [Streptomyce...
| 789 | 5.4e-105 |
| WP_205035898.1 | Holliday junction branch migration protein RuvA [Streptomyce...
| 789 | 5.8e-105 |
| WP_150182869.1 | Holliday junction branch migration protein RuvA [Streptomyce...
| 788 | 8.1e-105 |
| WP_119102488.1 | Holliday junction branch migration protein RuvA [Streptomyce...
| 787 | 9.2e-105 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0257 | Seems to have no N-terminal signal seq.
|