| ID | SAVERM_6835
| Type | CDS
|
| From | 8157959
| nt length | 1071
|
| To | 8159029
| aa length | 356
|
| Gene | ruvB
| pI | 4.99
|
| Definition | putative Holliday junction DNA helicase subunit A
| M.W (Da) | 38176
|
| Note | PF05491: Holliday junction DNA helicase ruvB C-terminus
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA recombination
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1518 ruvB holliday junction DNA helicase | 625 | 0.0e+00
|
| sgr | SGR_6017 putative Holliday junction DNA helicase subunit A | 601 | 0.0e+00
|
| sam | SAM23877_1569 ATP-dependent DNA helicase, component of RuvABC resolvasome | 608 | 0.0e+00
|
| scab | SCAB74891 putative Holliday junction DNA helicase subunit A | 637 | 0.0e+00
|
| sace | SACE_2023 Holliday junction DNA helicase RuvB | 460 | 5.0e-164
|
| nfar | nfa36950 ruvB Holliday junction DNA helicase A subunit | 477 | 7.6e-136
|
| mtub | gi|15609729 Holliday junction DNA helicase RuvB [Mycobacterium tuberculosis H37Rv] | 466 | 1.0e-132
|
| cglu | gi|19552870 COG2255:Holliday junction resolvasome helicase subunit [Corynebacterium glutamicum] | 445 | 1.7e-126
|
| bsub | BG12669 ruvB; Holliday junction DNA helicase | 370 | 6.7e-104
|
| ecoli | gi|16129813 Holliday junction DNA helicase RuvB [Escherichia coli K12] | 377 | 6.2e-106
|
| paer | PA0967 [gene=ruvB] [prot=Holliday junction DNA helicase RuvB] [comment=PA0967] | 374 | 9.5e-105
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RuvB_N | 1 | Holliday junction DNA helicase ruvB N-terminus | 15-246 | 367.6 | 1.9e-110
|
| RuvB_C | 1 | Holliday junction DNA helicase ruvB C-terminus | 264-337 | 101.6 | 1.4e-29
|
| AAA | 1 | ATPase family associated with various cellular activities (AAA) | 66-186 | 60.2 | 2.6e-16
|
| AAA_5 | 1 | AAA domain (dynein-related subfamily) | 65-183 | 35.6 | 7.6e-09
|
| TIP49 | 1 | TIP49 C-terminus | 36-93 | 25.9 | 4e-06
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| NEE16327.1 | Holliday junction branch migration DNA helicase RuvB [Streptomyce...
| 1613 | 0.0e+00 |
| WP_031104223.1 | Holliday junction branch migration DNA helicase RuvB [Strept...
| 1613 | 0.0e+00 |
| WP_168527191.1 | Holliday junction branch migration DNA helicase RuvB [Strept...
| 1592 | 0.0e+00 |
| WP_075027568.1 | MULTISPECIES: Holliday junction branch migration DNA helicas...
| 1590 | 0.0e+00 |
| WP_101406236.1 | MULTISPECIES: Holliday junction branch migration DNA helicas...
| 1584 | 0.0e+00 |
| WP_148007799.1 | Holliday junction branch migration DNA helicase RuvB [Strept...
| 1583 | 0.0e+00 |
| WP_153291648.1 | Holliday junction branch migration DNA helicase RuvB [Strept...
| 1582 | 0.0e+00 |
| WP_054233947.1 | MULTISPECIES: Holliday junction branch migration DNA helicas...
| 1580 | 0.0e+00 |
| WP_067365918.1 | Holliday junction branch migration DNA helicase RuvB [Strept...
| 1579 | 0.0e+00 |
| WP_031043160.1 | MULTISPECIES: Holliday junction branch migration DNA helicas...
| 1579 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3385 | Seems to have no N-terminal signal seq.
|