| ID | SAVERM_6837
| Type | CDS
|
| From | 8159839
| nt length | 1755
|
| To | 8161593
| aa length | 584
|
| Gene | secD
| pI | 10.24
|
| Definition | putative preprotein translocase SecD subunit
| M.W (Da) | 60508
|
| Note | PF02355: Protein export membrane protein
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | protein secretion
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1516 secD protein-export membrane protein | 833 | 0.0e+00
|
| sgr | SGR_6019 protein-export membrane protein SecD | 708 | 0.0e+00
|
| sam | SAM23877_1567 Protein translocase subunit SecD | 822 | 0.0e+00
|
| scab | SCAB74911 putative preprotein translocase SecD subunit | 776 | 0.0e+00
|
| sace | SACE_2025 preprotein translocase subunit SecD | 314 | 4.0e-101
|
| nfar | nfa36910 secD protein exporter membrane protein | 370 | 1.4e-103
|
| mtub | gi|15609724 protein export protein SecD [Mycobacterium tuberculosis H37Rv] | 346 | 2.1e-96
|
| cglu | gi|19552868 COG0342:Preprotein translocase subunit SecD [Corynebacterium glutamicum] | 295 | 4.0e-81
|
| bsub | BG12672 secDF, secF; protein-export membrane protein | 142 | 7.0e-35
|
| ecoli | gi|16128393 protein export protein SecD [Escherichia coli K12] | 102 | 7.0e-23
|
| paer | PA3821 [gene=secD] [prot=secretion protein SecD] [comment=PA3821] | 103 | 4.3e-23
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SecD_SecF | 1 | Protein export membrane protein | 369-544 | 45.0 | 7.1e-12
|
| MMPL | 1 | MMPL family | 389-559 | 38.8 | 4.6e-10
|
| Sec_GG | 1 | SecD/SecF GG Motif | 42-59 | 21.5 | 0.00011
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498655.1 | protein translocase subunit SecD [Streptomyces sp. SID5469]
| 2102 | 0.0e+00 |
| WP_059125566.1 | protein translocase subunit SecD [Streptomyces sp. NRRL F-51...
| 1915 | 0.0e+00 |
| WP_220294791.1 | protein translocase subunit SecD [Streptomyces sp. MBT84] >l...
| 1910 | 0.0e+00 |
| WP_148007801.1 | protein translocase subunit SecD [Streptomyces sp. me109] >l...
| 1887 | 0.0e+00 |
| WP_095933052.1 | protein translocase subunit SecD [Streptomyces sp. Tue6028] ...
| 1878 | 0.0e+00 |
| WP_028801483.1 | protein translocase subunit SecD [Streptomyces sp. 142MFCol3...
| 1872 | 0.0e+00 |
| WP_153291650.1 | protein translocase subunit SecD [Streptomyces fagopyri] >gb...
| 1865 | 0.0e+00 |
| WP_099500224.1 | MULTISPECIES: protein translocase subunit SecD [Streptomyces...
| 1862 | 0.0e+00 |
| WP_043438562.1 | protein translocase subunit SecD [Streptomyces nodosus] >gb
| 1860 | 0.0e+00 |
| WP_168527189.1 | protein translocase subunit SecD [Streptomyces sp. RPA4-2] >...
| 1850 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.5564 | Seems to have a cleavable N-term signal seq.
|