| ID | SAVERM_6838
| Type | CDS
|
| From | 8161595
| nt length | 1107
|
| To | 8162701
| aa length | 368
|
| Gene | secF
| pI | 9.73
|
| Definition | putative preprotein translocase SecF subunit
| M.W (Da) | 39249
|
| Note | PF02355: Protein export membrane protein
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | protein secretion
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1515 secF protein-export membrane protein | 618 | 0.0e+00
|
| sgr | SGR_6020 protein-export membrane protein SecF | 526 | 0.0e+00
|
| sam | SAM23877_1566 Protein translocase subunit SecF | 612 | 0.0e+00
|
| scab | SCAB74921 putative preprotein translocase SecF subunit | 578 | 0.0e+00
|
| sace | SACE_2026 preprotein translocase subunit SecF | 224 | 2.0e-70
|
| nfar | nfa36900 secF protein exporter membrane protein | 272 | 3.9e-74
|
| mtub | gi|15609723 protein export protein SecF [Mycobacterium tuberculosis H37Rv] | 251 | 7.1e-68
|
| cglu | gi|19552867 COG0341:Preprotein translocase subunit SecF [Corynebacterium glutamicum] | 225 | 2.2e-60
|
| ecoli | gi|16128394 protein export protein SecF [Escherichia coli K12] | 140 | 1.8e-34
|
| paer | PA3820 [gene=secF] [prot=secretion protein SecF] [comment=PA3820] | 137 | 2.0e-33
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SecD_SecF | 1 | Protein export membrane protein | 111-303 | 227.8 | 6.2e-68
|
| Sec_GG | 1 | SecD/SecF GG Motif | 42-60 | 23.7 | 2.2e-05
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_134039083.1 | protein translocase subunit SecF [Streptomyces bluensis] >db...
| 1638 | 0.0e+00 |
| WP_030166435.1 | protein translocase subunit SecF [Streptomyces sp. NRRL S-81...
| 1636 | 0.0e+00 |
| WP_196464063.1 | protein translocase subunit SecF [Streptomyces spinoverrucos...
| 1634 | 0.0e+00 |
| WP_141309369.1 | protein translocase subunit SecF [Streptomyces spinoverrucos...
| 1630 | 0.0e+00 |
| WP_150943670.1 | protein translocase subunit SecF [Streptomyces luteolifulvus...
| 1630 | 0.0e+00 |
| WP_152774915.1 | protein translocase subunit SecF [Streptomyces spongiae] >gb...
| 1628 | 0.0e+00 |
| WP_095754414.1 | protein translocase subunit SecF [Streptomyces sp. SA15] >gb...
| 1628 | 0.0e+00 |
| WP_189188004.1 | protein translocase subunit SecF [Streptomyces albiflavescen...
| 1628 | 0.0e+00 |
| WP_161064889.1 | protein translocase subunit SecF [Streptomyces sp. HUCO-GS31...
| 1627 | 0.0e+00 |
| WP_164369961.1 | protein translocase subunit SecF [Streptomyces sp. SID14446]...
| 1627 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.6201 | Seems to have no N-terminal signal seq.
|