| ID | SAVERM_6851
| Type | CDS
|
| From | 8178256
| nt length | 471
|
| To | 8178726
| aa length | 156
|
| Gene |
| pI | 10.2
|
| Definition | putative Holliday junction resolvase
| M.W (Da) | 16494
|
| Note | PF03652: Uncharacterised protein family (UPF0081)
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1500 hypothetical protein | 276 | 2.0e-97
|
| sgr | SGR_6035 conserved hypothetical protein | 268 | 2.0e-94
|
| sam | SAM23877_1552 putative Holliday junction resolvase | 280 | 2.0e-99
|
| scab | SCAB75071 hypothetical protein | 275 | 2.0e-97
|
| sace | SACE_2053 Holliday junction resolvase YqgF | 81 | 2.0e-21
|
| nfar | nfa36430 hypothetical protein | 147 | 5.4e-37
|
| mtub | gi|15609691 Holliday junction resolvase-like protein [Mycobacterium tuberculosis H37Rv] | 135 | 1.3e-33
|
| cglu | gi|19552843 COG0816:Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [Corynebacterium glutamicum] | 116 | 4.3e-28
|
| bsub | BG13792 yrrK; similar to hypothetical proteins | 80 | 5.6e-17
|
| ecoli | gi|16130850 Holliday junction resolvase-like protein [Escherichia coli K12] | 71 | 2.9e-14
|
| paer | PA0404 [gene=PA0404] [prot=conserved hypothetical protein] [comment=PA0404] | 44 | 3.9e-06
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RuvX | 1 | Holliday junction resolvase | 7-139 | 147.1 | 3.5e-43
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_062707800.1 | Holliday junction resolvase RuvX [Streptomyces regalis] >gb
| 655 | 4.5e-86 |
| WP_028803703.1 | MULTISPECIES: Holliday junction resolvase RuvX [unclassified...
| 651 | 1.4e-85 |
| WP_235458678.1 | Holliday junction resolvase RuvX [Streptomyces olivochromoge...
| 651 | 1.6e-85 |
| WP_128428906.1 | Holliday junction resolvase RuvX [Streptomyces cyaneus]
| 651 | 1.6e-85 |
| WP_187823173.1 | Holliday junction resolvase RuvX [Streptomyces sp. TRM68367]...
| 650 | 2.3e-85 |
| WP_037890390.1 | Holliday junction resolvase RuvX [Streptomyces viridochromog...
| 650 | 2.3e-85 |
| WP_019059754.1 | Holliday junction resolvase RuvX [Streptomyces prunicolor]
| 650 | 2.4e-85 |
| WP_126399301.1 | Holliday junction resolvase RuvX [Streptomyces cyaneochromog...
| 650 | 2.4e-85 |
| WP_081223351.1 | Holliday junction resolvase RuvX [Streptomyces sp. M41(2017)...
| 650 | 2.6e-85 |
| WP_189309605.1 | Holliday junction resolvase RuvX [Streptomyces brasiliensis]...
| 649 | 2.8e-85 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2087 | Seems to have no N-terminal signal seq.
|