| ID | SAVERM_6860
| Type | CDS
|
| From | 8187604
| nt length | 435
|
| To | 8188038
| aa length | 144
|
| Gene | nusB
| pI | 5.03
|
| Definition | putative transcription termination protein
| M.W (Da) | 16475
|
| Note | PF01029: NusB family
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA termination
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1490 putative NusB-family protein | 263 | 4.0e-93
|
| sgr | SGR_6044 putative NusB-family protein | 229 | 2.0e-79
|
| sam | SAM23877_1542 N utilization substance protein B-like protein | 260 | 8.0e-92
|
| scab | SCAB75161 putative transcription termination protein | 263 | 1.0e-92
|
| sace | SACE_2076 NusB antitermination factor | 146 | 7.0e-47
|
| nfar | nfa36310 nusB transcription termination factor | 125 | 1.9e-30
|
| mtub | gi|15609670 transcription antitermination protein NusB [Mycobacterium tuberculosis H37Rv] | 118 | 1.4e-28
|
| cglu | gi|19552830 COG0781:Transcription termination factor [Corynebacterium glutamicum] | 92 | 9.9e-21
|
| bsub | BG11710 nusB, yqhZ; translation/transcription coupling factor | 91 | 1.6e-20
|
| ecoli | gi|16128401 transcription antitermination protein NusB [Escherichia coli K12] | 59 | 7.6e-11
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| NusB | 1 | NusB family | 6-132 | 117.8 | 3.5e-34
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_028803693.1 | transcription antitermination factor NusB [Streptomyces sp. ...
| 715 | 1.2e-95 |
| WP_189188034.1 | transcription antitermination factor NusB [Streptomyces albi...
| 711 | 5.0e-95 |
| WP_099500247.1 | MULTISPECIES: transcription antitermination factor NusB [Str...
| 710 | 7.4e-95 |
| WP_095933030.1 | transcription antitermination factor NusB [Streptomyces sp. ...
| 706 | 2.5e-94 |
| WP_128378405.1 | transcription antitermination factor NusB [Streptomyces cave...
| 705 | 4.2e-94 |
| WP_119105220.1 | transcription antitermination factor NusB [Streptomyces spor...
| 704 | 7.0e-94 |
| WP_138047782.1 | transcription antitermination factor NusB [Streptomyces mont...
| 703 | 7.1e-94 |
| MPY42243.1 | transcription antitermination factor NusB [Streptomyces phyllanth...
| 703 | 8.4e-94 |
| WP_200421190.1 | transcription antitermination factor NusB [Streptomyces sp. ...
| 697 | 7.6e-93 |
| WP_103547786.1 | transcription antitermination factor NusB [Streptomyces popu...
| 697 | 7.7e-93 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2094 | Seems to have no N-terminal signal seq.
|