| ID | SAVERM_6880
| Type | CDS
|
| From | 8213111
| nt length | 687
|
| To | 8213797
| aa length | 228
|
| Gene | rpe
| pI | 4.44
|
| Definition | putative ribulose-phosphate 3-epimerase
| M.W (Da) | 24307
|
| Note | PF00834: Ribulose-phosphate 3 epimerase family
| AseI frg. | G2
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | main glycolytic pathways
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1464 ribulose-phosphate | 434 | 1.0e-157
|
| sgr | SGR_6063 putative ribulose-phosphate 3-epimerase | 410 | 2.0e-148
|
| sam | SAM23877_1523 Ribulose-phosphate 3-epimerase | 437 | 2.0e-159
|
| scab | SCAB75371 putative ribulose-phosphate 3-epimerase | 403 | 1.0e-145
|
| sace | SACE_2120 putatibe ribulose-phosphate 3-epimerase | 279 | 2.0e-96
|
| nfar | nfa36030 rpe ribulose-5-phosphate 3-epimerase | 274 | 5.4e-75
|
| mtub | gi|15608546 ribulose-phosphate 3-epimerase [Mycobacterium tuberculosis H37Rv] | 281 | 2.6e-77
|
| cglu | gi|19552810 COG0036:Pentose-5-phosphate-3-epimerase [Corynebacterium glutamicum] | 236 | 8.8e-64
|
| bsub | BG13393 rpe, yloR; ribulose-5-phosphate 3-epimerase [EC:5.1.3.1] | 198 | 2.0e-52
|
| ecoli | gi|16131264 ribulose-phosphate 3-epimerase [Escherichia coli K12] | 182 | 2.1e-47
|
| paer | PA0607 [gene=rpe] [prot=ribulose-phosphate 3-epimerase] [comment=PA0607] | 191 | 6.3e-50
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribul_P_3_epim | 1 | Ribulose-phosphate 3 epimerase family | 5-199 | 263.1 | 1.1e-78
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_103549712.1 | MULTISPECIES: ribulose-phosphate 3-epimerase [Streptomyces] ...
| 1126 | 1.7e-155 |
| WP_210891785.1 | ribulose-phosphate 3-epimerase [Streptomyces sp. BH-SS-21] >...
| 1123 | 5.2e-155 |
| WP_095933016.1 | ribulose-phosphate 3-epimerase [Streptomyces sp. Tue6028] >g...
| 1122 | 6.7e-155 |
| WP_037621115.1 | ribulose-phosphate 3-epimerase [Streptomyces aureus]
| 1120 | 1.1e-154 |
| WP_189710062.1 | ribulose-phosphate 3-epimerase [Streptomyces anandii] >dbj
| 1116 | 5.4e-154 |
| WP_189772824.1 | ribulose-phosphate 3-epimerase [Streptomyces tauricus] >dbj
| 1116 | 5.8e-154 |
| WP_151481024.1 | ribulose-phosphate 3-epimerase [Streptomyces albicerus]
| 1114 | 1.1e-153 |
| WP_101406276.1 | MULTISPECIES: ribulose-phosphate 3-epimerase [Streptomyces] ...
| 1114 | 1.1e-153 |
| WP_067366072.1 | MULTISPECIES: ribulose-phosphate 3-epimerase [Streptomyces] ...
| 1113 | 1.4e-153 |
| WP_190180536.1 | ribulose-phosphate 3-epimerase [Streptomyces naganishii]
| 1113 | 1.7e-153 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1114 | Seems to have no N-terminal signal seq.
|