| ID | SAVERM_6921
| Type | CDS
|
| From | 8256960
| nt length | 498
|
| To | 8257457
| aa length | 165
|
| Gene |
| pI | 5.73
|
| Definition | putative AsnC-family transcriptional regulator
| M.W (Da) | 17914
|
| Note | PF01037: AsnC family
| AseI frg. | T
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1425 putative AsnC-family transcriptional regulatory protein | 309 | 2.0e-110
|
| sgr | SGR_6107 putative AsnC-family transcriptional regulator | 274 | 6.0e-97
|
| sam | SAM23877_1486 putative AsnC-family transcriptional regulator | 284 | 9.0e-101
|
| scab | SCAB75801 putative AsnC-family transcriptional regulator | 286 | 1.0e-101
|
| sace | SACE_2280 putative AsnC-family transcriptional regulator | 190 | 7.0e-64
|
| nfar | nfa9830 transcriptional regulator | 143 | 6.6e-36
|
| mtub | gi|15610427 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) [Mycobacterium tuberculosis H37Rv] | 151 | 2.5e-38
|
| bsub | BG12522 ywrC; similar to transcriptional regulator (Lrp/AsnC family) | 75 | 2.0e-15
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| HTH_AsnC-type | 1 | AsnC-type helix-turn-helix domain | 20-61 | 61.0 | 6.4e-17
|
| AsnC_trans_reg | 1 | Lrp/AsnC ligand binding domain | 86-156 | 56.4 | 2.1e-15
|
| HTH_24 | 1 | Winged helix-turn-helix DNA-binding | 20-67 | 55.0 | 3.9e-15
|
| HTH_11 | 1 | HTH domain | 25-65 | 23.2 | 4.6e-05
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| CAJ90370.1 | putative AsnC-family transcriptional regulator [Streptomyces amb...
| 814 | 4.1e-110 |
| GHD24995.1 | AsnC family transcriptional regulator [Streptomyces violarus]
| 815 | 9.0e-110 |
| EFL42494.1 | leucine-responsive regulatory protein [Streptomyces griseoflavus ...
| 811 | 1.3e-109 |
| AXG52763.1 | putative AsnC-family transcriptional regulator [Streptomyces linc...
| 811 | 1.3e-109 |
| GGZ59596.1 | AsnC family transcriptional regulator [Streptomyces bluensis]
| 809 | 2.6e-109 |
| EDY59552.1 | AsnC-family transcriptional regulatory protein [Streptomyces svic...
| 807 | 6.5e-109 |
| GHE62816.1 | AsnC family transcriptional regulator [Streptomyces spiralis]
| 804 | 3.5e-108 |
| GAP46834.1 | AsnC-family transcriptional regulator [Streptomyces azureus]
| 799 | 9.9e-108 |
| EFL30786.1 | transcription regulator AsnC [Streptomyces viridochromogenes DSM ...
| 796 | 2.7e-107 |
| EFF89971.1 | leucine-responsive regulatory protein [Streptomyces sp. e14]
| 793 | 9.1e-107 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3293 | Seems to have no N-terminal signal seq.
|