| ID | SAVERM_6925
| Type | CDS
|
| From | 8261746
| nt length | 375
|
| To | 8261372
| aa length | 124
|
| Gene | rbpA
| pI | 5.34
|
| Definition | RNA polymerase-binding protein
| M.W (Da) | 14123
|
| Note | PF13397: Domain of unknown function (DUF4109)
| AseI frg. | T
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1421 RNA polymerase-binding protein | 253 | 1.0e-89
|
| sgr | SGR_6111 conserved hypothetical protein | 225 | 1.0e-78
|
| sam | SAM23877_1481 RNA polymerase-binding protein RbpA | 253 | 1.0e-89
|
| scab | SCAB75841 hypothetical protein | 231 | 6.0e-81
|
| sace | SACE_2290 hypothetical protein | 130 | 3.0e-41
|
| nfar | nfa31140 hypothetical protein | 125 | 1.1e-30
|
| mtub | gi|15609187 hypothetical protein Rv2050 [Mycobacterium tuberculosis H37Rv] | 128 | 1.0e-31
|
| cglu | gi|19552693 COG0481:Membrane GTPase LepA [Corynebacterium glutamicum] | 122 | 6.8e-30
|
| bsub | BG11261 yqaJ; unknown | 28 | 1.6e-01
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RbpA | 1 | RNA polymerase-binding protein | 4-107 | 142.4 | 5.8e-42
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_030677841.1 | MULTISPECIES: RNA polymerase-binding protein RbpA [Streptomy...
| 517 | 4.0e-66 |
| WP_003977404.1 | MULTISPECIES: RNA polymerase-binding protein RbpA [Terrabact...
| 515 | 7.8e-66 |
| WP_010468770.1 | MULTISPECIES: RNA polymerase-binding protein RbpA [Streptomy...
| 514 | 1.1e-65 |
| WP_010046329.1 | MULTISPECIES: RNA polymerase-binding protein RbpA [Streptomy...
| 514 | 1.2e-65 |
| WP_010357981.1 | MULTISPECIES: RNA polymerase-binding protein RbpA [Streptomy...
| 513 | 1.9e-65 |
| WP_058941040.1 | RNA polymerase-binding protein RbpA [Streptomyces kanasensis...
| 513 | 2.0e-65 |
| WP_121789819.1 | RNA polymerase-binding protein RbpA [Streptomyces sp. Z022] ...
| 512 | 2.3e-65 |
| WP_042173984.1 | MULTISPECIES: RNA polymerase-binding protein RbpA [unclassif...
| 512 | 2.4e-65 |
| WP_112468018.1 | RNA polymerase-binding protein RbpA [Streptomyces triticisol...
| 512 | 2.5e-65 |
| WP_046709182.1 | RNA polymerase-binding protein RbpA [Streptomyces europaeisc...
| 512 | 2.5e-65 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2247 | Seems to have no N-terminal signal seq.
|